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AT5G15050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT5G39990.1); Has 926 Blast hits to 925 proteins in 118 species: Archae - 0; Bacteria - 49; Metazoa - 525; Fungi - 0; Plants - 316; Viruses - 14; Other Eukaryotes - 22 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2604-MONOMERCAZy:GT14EC:2.4.1.-eggNOG:ENOG410XQ7M
eggNOG:KOG0799EMBL:AL391146EMBL:AY057600EMBL:AY086423
EMBL:AY124832EMBL:CP002688EMBL:KJ138690EnsemblPlants:AT5G15050
EnsemblPlants:AT5G15050.1entrez:831357GeneID:831357Genevisible:Q9LFQ0
GO:GO:0000139GO:GO:0008375GO:GO:0015020GO:GO:0016021
Gramene:AT5G15050.1hmmpanther:PTHR19297hmmpanther:PTHR19297:SF110HOGENOM:HOG000238323
InterPro:IPR003406KEGG:ath:AT5G15050OMA:WKESHRAPaxDb:Q9LFQ0
Pfam:PF02485PhylomeDB:Q9LFQ0PIR:T51450ProteinModelPortal:Q9LFQ0
Proteomes:UP000006548RefSeq:NP_197009.1SMR:Q9LFQ0STRING:3702.AT5G15050.1
TAIR:AT5G15050TMHMM:TMhelixUniGene:At.26272UniProt:Q9LFQ0
Coordinates (TAIR10) chr5:-:4871820..4873454
Molecular Weight (calculated) 49585.70 Da
IEP (calculated) 9.46
GRAVY (calculated) -0.20
Length 434 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKLKSYYMQ VRNQQQSLDR KWILPLAIGS ICSLFLLLLT NLASSSGQTR LIPFSVYGFR SSVFVESKIN PVSVSLTVSV SPPPPPRLAY LISGSSGDGQ
101: MLKRTLMALY HPNNQYVVHL DRESSPEERL DLSGFVANHT LFQRFQNVRM IVKANFVTYR GPTMVANTLH AAAILLREGG DWDWFINLSA SDYPLVTQDD
201: LLHTFSYLPR DLNFIDHTSN IGWKESHRAK PIIIDPGLYM SKKADVFWVS QKRSMPTAFK LFTGSAWMML SRPFVDYFIW GWDNLPRIVL MYYANFLSSP
301: EGYFHTVICN AREFTNTTVN SDLHFISWDN PPKQHPHHLT LDDFQRMVDS NAPFARKFRR DEPVLDKIDS ELLFRSHGMV TPGGWCIGTR ENGSDPCAVI
401: GDTSVIKPGL GAKRIEKLIT YLLSTENFRP RQCR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)