AT3G60380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.966 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT4G16790.1); Has 6102 Blast hits to 3981 proteins in 424 species: Archae - 6; Bacteria - 372; Metazoa - 2603; Fungi - 655; Plants - 291; Viruses - 28; Other Eukaryotes - 2147 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:22316913..22319144 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82643.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.54 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||
| Length | 743 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASPNPYTKR RSPPNVVVPP QPRYKSIGGG GFFCKSVLFA LFLLALPLFP SQAPDFVGET VLTKFWELIH LLFVGIAVAY GLFSRRNVES AVDLRMTRVD 101: ESSLSYVSRI FQVSSVFDEE FDDNSCEFVD VRSDESVSAR ASVVGKSESF VVESGELEES SEFGETNEVR AWNSQYFQGK SKVVVARPAY GLDGHVVHQP 201: LGLPIRRLRS SLRDNAALQD KSFADSCDGA VNAEAESLLA DNFFDEVLAA PASPVPWQAR PEMMGIGDNY PSNFQPISVD ETLKSISSRS TGSSSSQTSY 301: ASQNQNRFSP SRSVSAESLN SNVEELVKEK SRQSSSRSSS PSLPPSPSLS PSPPSPELVP NDTRRRSPEL VTDDTPRRAS HSRHYSDGSL LEEDVRRGFE 401: NELEGSKVRG RKAEFFSKKE RGSKSLNLAA ESSRRGNKSR RSYPPESISS PVGGADDSTT RRQDLQQKSN CHLLEENIRK GVEADHNNLR VKKGRSHDSL 501: ELTAEDSAKD EKVSESFPAL DVVFQPTNAK ASRRAMRSSR GGRDTLPEKD VVTRKLEDDT VDSDKSRKKD LPGKDKEMKL DGPRIEPRSW RASSNVSLRG 601: KSVRTIRSDR HGKDVKTDGD SSEDRAEAKV ESRGRTKSRR PRQEELSIVL HQEKSSETRA KSEPEEVAME EPQAEQQPEV TFEEEEEAAW ESQSNASHDH 701: NEVDRKAGEF IAKFREQIRL QKLISGEQPR GGGTGIFRNS QFR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)