AT5G08580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.669 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Calcium-binding EF hand family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT4G27790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2780976..2782961 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45847.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.71 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.95 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 391 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKASVILYI TVGILVLFLV SYSPKKKGDH DHHHGGHNQH HRLKLRSSFN FKPTRHDPVP FDPLVADMER RREDKEWERQ YIEHSHPELV SHSQKETTGG 101: GHEHAPGHES QPEWEEFMDA EDYLNDEEKF NVTDRLILLF PKIDVSPADG FMTESELTEW TMQSSAKEVV HRTQRDLDVH DRNKDGFISF SEYEPPSWVR 201: KSDNNSFGYD MGWWKEEHFN ASDANGDGLL NLTEFNDFLH PADTKNPKLL LWLCKEEVRE RDSDKDGKIS FEEFFHGLFD TVRNYEEDNH NSTHPYHDLP 301: EGPAKQLFSQ LDKNDDGYLS DVELLPIISK IHPTEHYYAK QQADYIISQA DSDKDRRLTL AEMIEHPYVF YSAIFDEDDT DDDYGFHDEF R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)