AT5G50375.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.952 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cyclopropyl isomerase | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Converts pentacyclic cyclopropyl sterols to conventional tetracyclic sterols. CPI1 function during and just after division and support gravitropism by establishing polar PIN2 localization. Required for endocytosis of PIN2 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cyclopropyl isomerase (CPI1); FUNCTIONS IN: cycloeucalenol cycloisomerase activity; INVOLVED IN: pinocytosis, sterol biosynthetic process, positive gravitropism, cytokinesis; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cycloeucalenol cycloisomerase (InterPro:IPR020532); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:20511856..20513931 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32645.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.41 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.47 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 280 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSGSSSPSLW LAPNPSKRWG ELFFLFYTPF WLTLCLGIVV PYKLYETFTE LEYLLLALVS AVPAFVIPML LVGKADRSLC WKDRYWVKAN LWIIVFSYVG 101: NYFWTHYFFK VLGASYTFPS WKMNNVPHTT FFLTHVCFLF YHVASNITLR RLRHSTADLP DSLKWCFEAA WILALSYFIA YLETIAIANF PYYEFVDRSA 201: MYRVGCLFYA IYFIVSFPMF FRMDEKSTDE WDLSRVAVDA LGAAMLVTII LDLWRLFLGP IVPLPEGQNC LQSGLPWFSN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)