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AT1G55130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : golgi 16618929
TAIR : golgi 16618929
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Endomembrane protein 70 protein family
Curator
Summary (TAIR10)
Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis.
Computational
Description (TAIR10)
transmembrane nine 6 (TMN6); CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: transmembrane nine 7 (TAIR:AT3G13772.1); Has 1575 Blast hits to 1549 proteins in 322 species: Archae - 0; Bacteria - 3; Metazoa - 617; Fungi - 232; Plants - 458; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPIWeggNOG:KOG1278EMBL:AC073944EMBL:BT002777
EMBL:CP002684EnsemblPlants:AT1G55130EnsemblPlants:AT1G55130.1entrez:841956
GeneID:841956Genevisible:Q9C720GO:GO:0000139GO:GO:0005768
GO:GO:0005794GO:GO:0005802GO:GO:0010008GO:GO:0016021
Gramene:AT1G55130.1hmmpanther:PTHR10766hmmpanther:PTHR10766:SF37HOGENOM:HOG000216679
InParanoid:Q9C720InterPro:IPR004240InterPro:IPR020846KEGG:ath:AT1G55130
KO:K17086OMA:SIGFYACPANTHER:PTHR10766PaxDb:Q9C720
Pfam:PF02990Pfam:Q9C720PhylomeDB:Q9C720PIR:H96592
PRIDE:Q9C720PRO:PR:Q9C720ProteinModelPortal:Q9C720Proteomes:UP000006548
RefSeq:NP_175909.1STRING:3702.AT1G55130.1SUPFAM:SSF103473TAIR:AT1G55130
tair10-symbols:AtTMN6tair10-symbols:TMN6TMHMM:TMhelixUniGene:At.27589
UniProt:Q9C720
Coordinates (TAIR10) chr1:+:20569654..20572266
Molecular Weight (calculated) 73626.80 Da
IEP (calculated) 8.16
GRAVY (calculated) 0.18
Length 637 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIRIRISGT LLLSFLFFST LHAFYLPGVA PRDFQKGDPL YVKVNKLSST KTQLPYDFYY LNYCKPPKIL NTGENLGEVL RGDRIENSVY TFEMLEDQPC
101: RVGCRVRVDA ESAKNFREKI DYEYRANMIL DNLPVAVLRQ RKDGIQSTTY EHGYRVGFKG SYEGSKEKKY FIHNHLSFRV MYHRDQESES SRIVGFEVTP
201: NSVLHEYKEW DENNPQLTTC NKDTKNLIQS NTVPQEVEEG KEIVFTYDVA FKESVIKWAS RWDTYLLMND DQIHWFSIIN SLMIVLFLSG MVAMIMMRTL
301: YKDISNYNQL ETQDEAQEET GWKLVHGDVF RTPMNSGLLC VYVGTGVQIF GMTLVTMIFA LLGFLSPSNR GGLTTAMVLL WVFMGIFAGY SSSRLHKMFK
401: GNEWKRITLK TAFMFPGILF AIFFVLNTLI WGERSSGAIP FSTMFALVCL WFGISVPLVF IGSYLGHKKP AIEDPVKTNK IPRQVPEQPW YMKPGFSILI
501: GGILPFGAVF IELFFILTSI WLNQFYYIFG FLFIVFLILI VTCAEITIVL CYFQLCSEDY NWCWRAYLTS GSSSLYLFLY SVFYFFTKLE ISKLVSGVLY
601: FGYMIIISYS FFVLTGSIGF YACLWFVRKI YSSVKID
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)