AT1G55130.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:golgi 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Endomembrane protein 70 protein family | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
transmembrane nine 6 (TMN6); CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: transmembrane nine 7 (TAIR:AT3G13772.1); Has 1575 Blast hits to 1549 proteins in 322 species: Archae - 0; Bacteria - 3; Metazoa - 617; Fungi - 232; Plants - 458; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:20569654..20572266 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 73626.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.16 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.18 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 637 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAIRIRISGT LLLSFLFFST LHAFYLPGVA PRDFQKGDPL YVKVNKLSST KTQLPYDFYY LNYCKPPKIL NTGENLGEVL RGDRIENSVY TFEMLEDQPC 101: RVGCRVRVDA ESAKNFREKI DYEYRANMIL DNLPVAVLRQ RKDGIQSTTY EHGYRVGFKG SYEGSKEKKY FIHNHLSFRV MYHRDQESES SRIVGFEVTP 201: NSVLHEYKEW DENNPQLTTC NKDTKNLIQS NTVPQEVEEG KEIVFTYDVA FKESVIKWAS RWDTYLLMND DQIHWFSIIN SLMIVLFLSG MVAMIMMRTL 301: YKDISNYNQL ETQDEAQEET GWKLVHGDVF RTPMNSGLLC VYVGTGVQIF GMTLVTMIFA LLGFLSPSNR GGLTTAMVLL WVFMGIFAGY SSSRLHKMFK 401: GNEWKRITLK TAFMFPGILF AIFFVLNTLI WGERSSGAIP FSTMFALVCL WFGISVPLVF IGSYLGHKKP AIEDPVKTNK IPRQVPEQPW YMKPGFSILI 501: GGILPFGAVF IELFFILTSI WLNQFYYIFG FLFIVFLILI VTCAEITIVL CYFQLCSEDY NWCWRAYLTS GSSSLYLFLY SVFYFFTKLE ISKLVSGVLY 601: FGYMIIISYS FFVLTGSIGF YACLWFVRKI YSSVKID |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)