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AT4G29680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.953
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:18998720 (2009): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Alkaline-phosphatase-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Alkaline-phosphatase-like family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process, nucleotide metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: Alkaline-phosphatase-like family protein (TAIR:AT4G29690.1); Has 2446 Blast hits to 2426 proteins in 629 species: Archae - 13; Bacteria - 1090; Metazoa - 671; Fungi - 207; Plants - 107; Viruses - 6; Other Eukaryotes - 352 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G29680-MONOMEREC:3.6.1.9eggNOG:COG1524eggNOG:KOG2645
EMBL:AB493707EMBL:AL079344EMBL:AL161575EMBL:CP002687
EnsemblPlants:AT4G29680EnsemblPlants:AT4G29680.1entrez:829089Gene3D:3.40.720.10
GeneID:829089GO:GO:0005773GO:GO:0016021GO:GO:0035529
Gramene:AT4G29680.1hmmpanther:PTHR10151HOGENOM:HOG000231018InterPro:IPR002591
InterPro:IPR017849InterPro:IPR017850InterPro:IPR024873KEGG:ath:AT4G29680
OMA:RGSHGYDPANTHER:PTHR10151Pfam:PF01663PhylomeDB:Q9SU83
PIR:T09931Proteomes:UP000006548Reactome:R-ATH-1660662Reactome:R-ATH-196843
RefSeq:NP_194697.1SMR:Q9SU83STRING:3702.AT4G29680.1SUPFAM:SSF53649
TAIR:AT4G29680TMHMM:TMhelixUniGene:At.23303UniProt:Q9SU83
Coordinates (TAIR10) chr4:-:14538067..14539557
Molecular Weight (calculated) 54681.10 Da
IEP (calculated) 5.73
GRAVY (calculated) -0.15
Length 496 amino acids
Sequence (TAIR10)
(BLAST)
001: MISGDTLSAK KPKSVPQEED QDPPSQSIAL LDNHTDSSGS DSSTRSISSC FIFTSLLLVT CIALSAASAF AFLFFSSQKP VLSLNQISKS PAFDRSVARP
101: LKKLDKPVVL LISSDGFRFG YQFKTKLPSI HRLIANGTEA ETGLIPVFPT LTFPNHYSIV TGLYPAYHGI INNHFVDPET GNVFTMASHE PEWWLGEPLW
201: ETVVNQGLKA ATYFWPGSEV HKGSWNCPQG LCQNYNGSVP FDDRVDTILS YFDLPSNEIP SFMTLYFEDP DHQGHQVGPD DPQITEAVVN IDRLIGRLID
301: GLEKRGIFED VTMIMVGDHG MVGTCDKKLV VLDDLAPWIK IPSSWVQYYT PLLAIQPPSG HDAADIVAKI NEGLSSGKVE NGKYLKVYLK EDLPSRLHYV
401: DSDRIPPIIG LVDEGFKVEQ KKSKAKECGG AHGYDNAFFS MRTIFIGHGP MFSKGRKVPS FENVQIYNVI SSILGLKAAP NNGSDEFSSS ILLPRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)