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AT5G07790.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQR0eggNOG:KOG1922EMBL:AB005249EMBL:CP002688
EnsemblPlants:AT5G07790EnsemblPlants:AT5G07790.1EnsemblPlants:AT5G07790.2entrez:830672
GeneID:830672Gramene:AT5G07790.1Gramene:AT5G07790.2hmmpanther:PTHR33167
hmmpanther:PTHR33167:SF3KEGG:ath:AT5G07790ncoils:CoilOMA:KELMMEM
PhylomeDB:Q9FF13Proteomes:UP000006548RefSeq:NP_001190252.1RefSeq:NP_196396.1
STRING:3702.AT5G07790.1TAIR:AT5G07790UniGene:At.32671UniProt:Q9FF13
Coordinates (TAIR10) chr5:+:2484073..2486107
Molecular Weight (calculated) 69754.20 Da
IEP (calculated) 8.46
GRAVY (calculated) -0.76
Length 616 amino acids
Sequence (TAIR10)
(BLAST)
001: MQQNSFFLGV NRDITDARTA SGWSLCPVLD IDTTRYGVNV HVDDTFSFLY SDLYLRQVKE ALRHTMLVHE SVFESQICEL HRLYRKQKEL MMEMEETRHN
101: KALYLNSGLP IPRTHWMSSS ISAYQTRNLP HEEENISRLL VDNKVEKFEK KKVLDLELPV FEYSDMLEEV HEAQNFLEEQ SLQRMSLDSG KQSSKLQLDL
201: NEPAKIEEHS DYVFNQFLSS VISNEIGEES DTKNEGESLV KGSNGINEAQ GSVKCREDYV IDLNMSPPSS EEELTIVKKF ETEKPQESSS VSLHGKHGLD
301: QPQGVVQELP CLTSTLLLDK RYKSLMTRSR SRNKVKHCPS NKTFKGSDHD PHSSGQASSE SQSNQTSMEK GSSSSLSEAK SAKKGTSLGN KRHCKPQMKS
401: SKGQKVVAKR SGRVKRKRSR RISLVAEGNY QQVSAAEAIV DISRKSGRET AACITSLSKN LLWFADISSS VAEDNKIDTL QLTEKKLEEH ETNLRLNSSD
501: NIAAVSSIVL KKQRRSRARQ GKRKCQDDQH IVDTFSEWEA NDDLQVIGKL MEASDLKWNC WFPKNKSKSS PPKPVDAFTS SGEEKTGVDW GALRKRRRGS
601: RIPAADFKHM IINQVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)