AT2G37930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3527) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF3527); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast envelope; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT5G01030.2); Has 289 Blast hits to 262 proteins in 54 species: Archae - 0; Bacteria - 9; Metazoa - 59; Fungi - 32; Plants - 123; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:15873284..15874770 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51963.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.79 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||
| Length | 467 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRNQSFSVRS QAFSDATDAD TVMRVDQKGK REHQLLSMKQ KELSHASELS SCISPGSEKF RTVECQDRRH DVEGECSSPV SVMERNQEKP CLLDQNIPTM 101: SSKKERDPSP NRRFSFSFSQ MSRSFSSKES SSSLSSTSHA SAKSGPLTFT NSVYTTHSTR TKSNGHNRTR SGPILKPKTE KNNVPSLQVA SKPSNTRPPT 201: KEKKQSSSRV HALLQFTLRK GINLFQFVVG DNSNNVLAAT MKSSDSSTRS YTLYTVNEVK NKTGNWLSRH KNEHPFVHTI IGEMKTVTTF TSDSSIHKSE 301: TVLFGVDSTN EELAAIVQTR NTTTIILPSG VHTLPKDGNN SPLPLINRWK TGGECDCGGW DIGCKLRVLS YNHTKTQTLS SFQLFDQERD EPAFKMVSHG 401: DELHSVEFGS SISLLEAFFI SLAVTSHQSW CQEEEEEEVV VIGDCLLKRE TPAKYATNPP VSPIGRV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)