suba logo
AT1G13940.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF863)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF863); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863, plant (InterPro:IPR008581); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G69360.1); Has 222 Blast hits to 202 proteins in 28 species: Archae - 0; Bacteria - 4; Metazoa - 12; Fungi - 2; Plants - 194; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVTMeggNOG:ENOG410YECTEMBL:AC068197EMBL:CP002684
EnsemblPlants:AT1G13940EnsemblPlants:AT1G13940.1entrez:837954GeneID:837954
Gramene:AT1G13940.1hmmpanther:PTHR33167hmmpanther:PTHR33167:SF3HOGENOM:HOG000152597
InterPro:IPR008581KEGG:ath:AT1G13940OMA:RERTFIDPfam:PF05904
PhylomeDB:Q9LMG4Proteomes:UP000006548RefSeq:NP_172847.1TAIR:AT1G13940
UniGene:At.41999UniProt:Q9LMG4
Coordinates (TAIR10) chr1:-:4762703..4765923
Molecular Weight (calculated) 112944.00 Da
IEP (calculated) 6.25
GRAVY (calculated) -0.83
Length 1005 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGTKVHCESL FGGYHHSMGD LNKESNNGCR WPLFYGDNKT SASNNDQCYN NGFTSQTTFG FDKDVVRRTM LEHEAVFKTQ VLELHRVYRT QKDMMDELKR
0101: KQFNKEWVQI EASLSSQATN DDVRKWKIPS FPLANSVYDR PSMSVVEDNG HSPMKGSNSQ GPVSWQNGAS SKSVEVSEVR PTKIRRKMID LCLPADEYID
0201: DNEEVVELKD HRVCSTSSQL PNGDVKTESR IDGVRIGYGS SRSNGLADLN EPVDAQEANE FAYGHSRDLR NGEFQGHIRD YGKSLNSGSV REHIPVIPLQ
0301: PDLNGKPKVW SHQPLRTDHY NGTHKSAAPF FQPAKPLDSL SQPMQVLMNS SQRVMSLPNS GPPSKAVVWR ERTFIDLEAD TDTNSSHEAV IHQNHLDSSL
0401: TSHQQRPLYP YIRPDSAVSW NHLHSSWQNP SFGFPQKVAS AQRYPVLNMS DTLIGNAQKQ GYLGDRLQFE SNSRFDSGCG NSSRLNHNMF YNECSTSSKS
0501: KVAGTGYNYP NGGRSDYSSE RKFVRDLNLN VTLSNTSVVE VRKDEEHLAT LPWLNKPKSV CNSELADGKW SLKSNDAVPS SSLKPLDIRD EAGDKVQNIM
0601: WLERLKSGSC SNNPVTEKID ANKEIPGLAY KDQSNVEKGK VHYVRMLDMN EPCDPLWDED QQTEEQTETR VSASNRCQID LNILGSDDEG ENCSVPASSR
0701: LNSKAPMIDL ETVPESDDEE EDGNISGEKR SEVKSIEEKT LEKPPEFEKL AAETIVAIYS ACLDREVEVV ASSEVSETII LHWFAETVNT HKENLDKKLD
0801: TFSRNQSRSI EDIDYFESMT LQLPDISEQE YMPKPLVPEN LKLEETTGTA LVTSQRPRRG NARKGKQRRD FQRDILPGLL SLSKHEVTED IQMFDGFMRA
0901: TGRSWTPTGL TRKKTGSRGR PRRAITIPAE PVYCPVPAPA PPPPSVQQHV SNQSNNGETE MCLEDRSFAG WGKMTRRPRR QRCPSASTTT ATTSNQRSSS
1001: HAPFT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)