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AT5G56240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: hapless 8 (TAIR:AT5G56250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ16eggNOG:ENOG410YCVJEMBL:CP002688EnsemblPlants:AT5G56240
EnsemblPlants:AT5G56240.1entrez:835723ExpressionAtlas:F4K7K7GeneID:835723
Gramene:AT5G56240.1hmmpanther:PTHR35767hmmpanther:PTHR35767:SF1iPTMnet:F4K7K7
PaxDb:F4K7K7PRIDE:F4K7K7ProteinModelPortal:F4K7K7Proteomes:UP000006548
RefSeq:NP_200435.3STRING:3702.AT5G56240.2TAIR:AT5G56240UniGene:At.7071
UniProt:F4K7K7
Coordinates (TAIR10) chr5:-:22760088..22763539
Molecular Weight (calculated) 109153.00 Da
IEP (calculated) 7.98
GRAVY (calculated) -0.81
Length 986 amino acids
Sequence (TAIR10)
(BLAST)
001: MFLSTENPPN DPLSSSSSPF LQHLTSSSHE LGQSHLSNFS IRDYAYSNRK NNIKNNWPFS SKSLQLFSTH GVTNPLPPFQ KFSTVSSKFE TTASPSSGKQ
101: IVSSYVHQGR DLDLAKLGLN QTVAETSSKG VCSQSRIIEN GLFPSTSVSK SEVEILVATT SNKKDNHSRK CGRGMVKSKE DSCAGLVTTS ESIMASKTCP
201: ICKTFSSASN TTLNAHIDQC LSVDSALLPP VVFSKPNKPR SKPPRVKVKT MVDIYASAKQ GTLEDLDRRN GTKWVSILSY SNRVVADKSE VSKKRKVSPV
301: GVGPVYIDAK GQKLRILSGF SEKKSSTTPL REQHEDGSSD KKCLGQGSKG TNKSLRKIRR GKKPHKFVKL TNHKADGPEI RGVQRGFSGE GSHMGHHRRI
401: YNQRMLAKRG LVSKKLNEKG HELSEDDEDT WSGGDPTVLR GTDLSATDSY PLKKQKLGSE VAGRKKTLFR SQSAQSRSFR VPQSEKEDES LEGVNINRLK
501: KSVASFQEDK YPPGKKFCSD ASPRGTSMRK FSPPFVPNAW RRLSMPVELK KARLDFSEEK DDEETGKWES EMTHERELRD DDYVSGDDGE NNEVLLRSNP
601: SSSGYDDYND DDEESSEEEG DNNKRAHVLD QTDYTGAEFY QSESDSPTSI EILPSERAMY YSEAGNMIYG QTSCKEDERF DSEVGQGSLF VEVDTIPIPG
701: PPGSFLPSPR DMGFDENLGN SSVITSQVQS SMDQLDRNSS ESPVSAVSNF AAGRLNFPAE LSSFRENFSP DIAMSYSTTP MSFCVPSHHG TITEAEPITI
801: DKTISPSRFR NNDQESCCCQ RKERISEGIT LNHQGSHLLQ RRAASSSNTM NLTNSPTRLD PNHPFEQSPY KTQQALDLQM SKFSSRKSLN AVVPPSPSNP
901: VLRLMGKDLM VMNQGEADEE ASRSSLTPNP QFVDPPCGGT GLYFNTGLYL RNSFDSTHQP QVQAQQQSQA AAFRNNFDHV RYFSPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)