suba logo
AT1G26620.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF863)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF863); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863, plant (InterPro:IPR008581); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G69360.1); Has 270 Blast hits to 240 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 0; Plants - 251; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVTMeggNOG:ENOG410YECTEMBL:AC013427EMBL:CP002684
EnsemblPlants:AT1G26620EnsemblPlants:AT1G26620.1entrez:839202GeneID:839202
Gramene:AT1G26620.1hmmpanther:PTHR33167hmmpanther:PTHR33167:SF3HOGENOM:HOG000152597
InterPro:IPR008581KEGG:ath:AT1G26620OMA:NACASEDPfam:PF05904
PhylomeDB:Q9FZE6PIR:D86393Proteomes:UP000006548RefSeq:NP_173984.1
TAIR:AT1G26620UniGene:At.51776UniGene:At.69018UniProt:Q9FZE6
Coordinates (TAIR10) chr1:-:9195838..9198719
Molecular Weight (calculated) 96510.30 Da
IEP (calculated) 6.45
GRAVY (calculated) -0.90
Length 867 amino acids
Sequence (TAIR10)
(BLAST)
001: MRDAADSSSY SGYEKDFMKH TMLEHEAVFK NQVHELHRLY RVQKNLVEEV KGKNLNEVMN VSDHHTSENE SKRKLHGFLL PNSTCGEGSS TQASNGRLQN
101: GGSSNGDASE GRDVKGRRRM IDLQLPADEY LDTDETTNTG ENTSFPPYNQ LKSGRGDASH RSYPSGSCLD VKNSNGLADL NEPLKGQDSE PAALSRDMYS
201: HYGRNNAHVQ GQWLEKNRTQ NGWMVLEAGQ DRSTQRDQVH LPSHSGQVLS NNAFQPQSYP TTDHSKVKFS GERAHRELEV RSKTPQVSYD SYVESSVAST
301: APRSVNDYRP EFFKPLTHWS SSGRTMTSSN QKSYPVQTNP YMNFDTHARP DLSFENRSHV SNGLYQGFSS GSKQSFYNFP STGFKPNASI GEVANSHSFV
401: NLQGPKRQEC SAGLPWLKPQ PPYRSGMSNG FFDLNASTNQ FMDGTDAGDD LTCASVLKGL RSASYSNNAN MGRVETNNSQ SSTKIIGSPI FGKQFVCKQE
501: RTPLIPHSLW IANQHKEVNH LVKRDLDINL PCDASVSVDQ HGAKAYYVDK KEGKKAANFR HYIDLNSCAN EDDEDSGFLS SLSVKTKART WIDLEAPPTL
601: ESEEEGDNSQ DKTNEETWRM MQGQDGNSMN ELIKVAAEAI VAISMAGHQR HPDDAASSST DAASKSPLSW FAEIITSCGD ELERKIDGSP EATDFEGNRE
701: DYSSGEIDYF EAMTLNIQET KEEDYMPEPL VPENLKFEDT CINKPRRGQA RRGRPKRDFQ RDTLPGLSSL SRHEVTEDIQ MFGGLMKTGD YTWSSGLAVR
801: RNSKRKRNVT NINQAPLCPS MAQPMNESVS VGGLEDSKLS GWGQATRRPR RQRCPPAGSN PPTVILT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)