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AT1G03750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : switch 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
switch 2 (SWI2); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1); Has 20033 Blast hits to 14398 proteins in 1655 species: Archae - 120; Bacteria - 5954; Metazoa - 4199; Fungi - 4321; Plants - 1927; Viruses - 177; Other Eukaryotes - 3335 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2536-MONOMEREC:3.6.4.-eggNOG:ENOG410XP4ZeggNOG:KOG0387
EMBL:AC003027EMBL:CP002684EnsemblPlants:AT1G03750EnsemblPlants:AT1G03750.1
entrez:839417Gene3D:3.40.50.300GeneID:839417Genevisible:F4I2H2
GO:GO:0003677GO:GO:0004386GO:GO:0005524GO:GO:0006281
GO:GO:0016020Gramene:AT1G03750.1hmmpanther:PTHR10799hmmpanther:PTHR10799:SF65
InParanoid:F4I2H2InterPro:IPR000330InterPro:IPR001650InterPro:IPR014001
InterPro:IPR027417iPTMnet:F4I2H2KEGG:ath:AT1G03750OMA:CDSCPFC
PaxDb:F4I2H2Pfam:F4I2H2Pfam:PF00176Pfam:PF00271
Pfscan:PS51192Pfscan:PS51194PIR:H86167PRIDE:F4I2H2
PRO:PR:F4I2H2PROSITE:PS51192PROSITE:PS51194ProteinModelPortal:F4I2H2
Proteomes:UP000006548RefSeq:NP_171871.2SMART:SM00487SMART:SM00490
SMR:F4I2H2STRING:3702.AT1G03750.1SUPFAM:SSF52540TAIR:AT1G03750
tair10-symbols:CHR9UniGene:At.42525UniGene:At.42526UniProt:F4I2H2
Coordinates (TAIR10) chr1:+:937920..941068
Molecular Weight (calculated) 98491.90 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.51
Length 862 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLLHTFKET LKPCGSFPSS SSLRVSSTQE LEPSRKPPKS SLSQQLLRLD DSYFLPSKHE SKISKTQVED FDHNEDDHKR NIKFDEEEVD EDDERSIEFG
101: RPGLSRAEFD YSGPYEPLML SSIGEIPIIH VPASINCRLL EHQREGVKFM YNLYKNNHGG ILGDDMGLGK TIQTIAFLAA VYGKDGDAGE SCLLESDKGP
201: VLIICPSSII HNWESEFSRW ASFFKVSVYH GSNRDMILEK LKARGVEVLV TSFDTFRIQG PVLSGINWEI VIADEAHRLK NEKSKLYEAC LEIKTKKRIG
301: LTGTVMQNKI SELFNLFEWV APGSLGTREH FRDFYDEPLK LGQRATAPER FVQIADKRKQ HLGSLLRKYM LRRTKEETIG HLMMGKEDNV VFCQMSQLQR
401: RVYQRMIQLP EIQCLVNKDN PCACGSPLKQ SECCRRIVPD GTIWSYLHRD NHDGCDSCPF CLVLPCLMKL QQISNHLELI KPNPKDEPEK QKKDAEFVST
501: VFGTDIDLLG GISASKSFMD LSDVKHCGKM RALEKLMASW ISKGDKILLF SYSVRMLDIL EKFLIRKGYS FARLDGSTPT NLRQSLVDDF NASPSKQVFL
601: ISTKAGGLGL NLVSANRVVI FDPNWNPSHD LQAQDRSFRY GQKRHVVVFR LLSAGSLEEL VYTRQVYKQQ LSNIAVAGKM ETRYFEGVQD CKEFQGELFG
701: ISNLFRDLSD KLFTSDIVEL HRDSNIDENK KRSLLETGVS EDEKEEEVMC SYKPEMEKPI LKDLGIVYAH RNEDIINIGE TTTSTSQRLN GDGNSADRKK
801: KKRKGCSEEE DMSSSNREQK REKYKMLAEF KGMEILEFSR WVLSASPFDR EKLLQDFLER VK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)