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AT5G12350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; FUNCTIONS IN: chromatin binding, zinc ion binding, Ran GTPase binding; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G19420.1); Has 23773 Blast hits to 8858 proteins in 456 species: Archae - 73; Bacteria - 2346; Metazoa - 9625; Fungi - 1299; Plants - 3027; Viruses - 3; Other Eukaryotes - 7400 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5184eggNOG:ENOG410IHFWEMBL:CP002688EnsemblPlants:AT5G12350
EnsemblPlants:AT5G12350.1entrez:831110Gene3D:2.130.10.30Gene3D:2.30.29.30
Gene3D:3.30.40.10GeneID:831110GO:GO:0005886GO:GO:0046872
Gramene:AT5G12350.1hmmpanther:PTHR22870hmmpanther:PTHR22870:SF219InParanoid:F4K0X5
InterPro:IPR000306InterPro:IPR000408InterPro:IPR001849InterPro:IPR009091
InterPro:IPR011011InterPro:IPR011993InterPro:IPR013083InterPro:IPR013591
InterPro:IPR017455InterPro:IPR027988iPTMnet:F4K0X5KEGG:ath:AT5G12350
ncoils:CoilOMA:FPMPSELPaxDb:F4K0X5Pfam:PF00415
Pfam:PF01363Pfam:PF08381Pfam:PF13713Pfam:PF16457
Pfscan:PS50012Pfscan:PS50178Pfscan:PS51514PRIDE:F4K0X5
PRINTS:PR00633PROSITE:PS00626PROSITE:PS50012PROSITE:PS50178
PROSITE:PS51514ProteinModelPortal:F4K0X5Proteomes:UP000006548RefSeq:NP_568268.3
scanprosite:PS00626SMART:SM00064SMR:F4K0X5STRING:3702.AT5G12350.1
SUPFAM:SSF50729SUPFAM:SSF50985SUPFAM:SSF57903TAIR:AT5G12350
UniGene:At.22310UniGene:At.51056UniProt:F4K0X5
Coordinates (TAIR10) chr5:+:3995789..4000545
Molecular Weight (calculated) 117528.00 Da
IEP (calculated) 9.23
GRAVY (calculated) -0.52
Length 1075 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSRNGRMASD LSRAGPVERD IEQAIIALKK GAYLLKYGRR GKPKFCPFRL SNDETVLIWF SGNEEKHLKL SHVSRIISGQ RTPIFQRYPR PEKEYQSFSL
0101: IYSERSLDVI CKDKDEAEVW FTGLKALISH CHQRNRRTES RSDGTPSEAN SPRTYTRRSS PLHSPFSSND SLQKDGSNHL RIHSPFESPP KNGLDKAFSD
0201: MALYAVPPKG FYPSDSATIS VHSGGSDSMH GHMRGMGMDA FRVSMSSAVS SSSHGSGHDD GDALGDVFIW GEGIGEGVLG GGNRRVGSSF DIKMDSLLPK
0301: ALESTIVLDV QNIACGGQHA VLVTKQGESF SWGEESEGRL GHGVDSNIQQ PKLIDALNTT NIELVACGEF HSCAVTLSGD LYTWGKGDFG VLGHGNEVSH
0401: WVPKRVNFLL EGIHVSSIAC GPYHTAVVTS AGQLFTFGDG TFGVLGHGDK KSVFIPREVD SLKGLRTVRA ACGVWHTAAV VEVMVGSSSS SNCSSGKLFT
0501: WGDGDKGRLG HGNKEPKLVP TCVAALVEPN FCQVACGHSL TVALTTSGHV YTMGSPVYGQ LGNSHADGKT PNRVEGKLHK SFVEEIACGA YHVAVLTSRT
0601: EVYTWGKGSN GRLGHGDVDD RNSPTLVESL KDKQVKSIAC GTNFTAAVCI HRWASGMDQS MCSGCRQPFS FKRKRHNCYN CGLVFCHSCT SKKSLKACMA
0701: PNPNKPYRVC DKCFNKLKKT METDPSSHSS LSRRGSINQG SDPIDKDDKF DSRSDGQLAR FSLMESMRQV DSRHKKNKKY EFNSSRVSPI PSGSSQRGAL
0801: NIAKSFNPVF GASKKFFSAS VPGSRIVSRA TSPISRRPSP PRSTTPTPTL SGLATPKFVV DDTKRTNDNL SQEVVKLRSQ VESLTRKAQL QEVELERTTK
0901: QLKEALAITN EETTRCKAAK EVIKSLTAQL KDMAERLPVG SARTVKSPPS LNSFGSSPGR IDPFNILNQA NSQESEPNGI TTPMFSNGTM TPAFGNGEAT
1001: NEARNEKEWV EQDEPGVYIT LTALAGGARD LKRVRFSRKR FSEIQAEQWW ADNRGRVYEQ YNVRMVDKAS EDLPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)