AT2G31290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.871 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin carboxyl-terminal hydrolase family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin carboxyl-terminal hydrolase family protein; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT3G63090.1); Has 410 Blast hits to 406 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 408; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:13344151..13345398 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48699.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.58 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||
| Length | 415 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMTRELYRI LGTKYAPLLI RRFSLWSTKK DPDLESALSR NKRWIVNSRL KNIILRCPNQ VASIKFLQKK FKTLDLQGKA LNWLKKYPCC FHVYLENDEY 101: YCRLTKPMMT LVEEEELVKD TQEPVLADRL AKLLMLSVNQ RLNVVKLNEF KRSFGFPDDY VIRIVPKYSD VFRLVNYSGR KSSMEIELLL WKPELAVSAV 201: EAAAKKCGSE PSFSCSLPST WTKPWERFME FNAFPYISPY EDHGDLVEGS KESEKRSVGL VHELLSLTLW KKLSIVKLSH FKREFGLPEK LNGMLLKHPG 301: IFYVGNKYQV HTVILREGYN GSELIHKDPL VVVKDKFGEL MQQGLYEYNH RRYLANLEKK REKGIESLKP VVRKKDRNHD RDDVDEEENH GDRPGGLFDP 401: EERKRFYQIL FSDTQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)