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AT2G41080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 35775 Blast hits to 12998 proteins in 218 species: Archae - 0; Bacteria - 5; Metazoa - 12; Fungi - 37; Plants - 35395; Viruses - 0; Other Eukaryotes - 326 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC004261EMBL:AY074642
EMBL:CP002685EnsemblPlants:AT2G41080EnsemblPlants:AT2G41080.1entrez:818707
Gene3D:1.25.40.10GeneID:818707Genevisible:Q8S9M4GO:GO:0008270
Gramene:AT2G41080.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF806HOGENOM:HOG000237570
InParanoid:Q8S9M4InterPro:IPR002885InterPro:IPR011990InterPro:IPR032867
KEGG:ath:AT2G41080PaxDb:Q8S9M4Pfam:PF01535Pfam:PF13041
Pfam:PF14432Pfam:Q8S9M4Pfscan:PS51375PhylomeDB:Q8S9M4
PIR:T02111PRIDE:Q8S9M4PRO:PR:Q8S9M4PROSITE:PS51375
ProteinModelPortal:Q8S9M4Proteomes:UP000006548RefSeq:NP_850342.1SMR:Q8S9M4
STRING:3702.AT2G41080.1SUPFAM:SSF48452TAIR:AT2G41080TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.37021UniProt:Q8S9M4
Coordinates (TAIR10) chr2:+:17132857..17134554
Molecular Weight (calculated) 63442.90 Da
IEP (calculated) 7.51
GRAVY (calculated) -0.16
Length 565 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMYSKLGDF PSAVAVYGRM RKKNYMSSNI LINGYVRAGD LVNARKVFDE MPDRKLTTWN AMIAGLIQFE FNEEGLSLFR EMHGLGFSPD EYTLGSVFSG
101: SAGLRSVSIG QQIHGYTIKY GLELDLVVNS SLAHMYMRNG KLQDGEIVIR SMPVRNLVAW NTLIMGNAQN GCPETVLYLY KMMKISGCRP NKITFVTVLS
201: SCSDLAIRGQ GQQIHAEAIK IGASSVVAVV SSLISMYSKC GCLGDAAKAF SEREDEDEVM WSSMISAYGF HGQGDEAIEL FNTMAEQTNM EINEVAFLNL
301: LYACSHSGLK DKGLELFDMM VEKYGFKPGL KHYTCVVDLL GRAGCLDQAE AIIRSMPIKT DIVIWKTLLS ACNIHKNAEM AQRVFKEILQ IDPNDSACYV
401: LLANVHASAK RWRDVSEVRK SMRDKNVKKE AGISWFEHKG EVHQFKMGDR SQSKSKEIYS YLKELTLEMK LKGYKPDTAS VLHDMDEEEK ESDLVQHSEK
501: LAVAFALMIL PEGAPIRIIK NLRVCSDCHV AFKYISVIKN REITLRDGSR FHHFINGKCS CGDYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)