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AT5G19840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.951
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G20810.2); Has 1685 Blast hits to 1680 proteins in 337 species: Archae - 0; Bacteria - 393; Metazoa - 598; Fungi - 233; Plants - 224; Viruses - 6; Other Eukaryotes - 231 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EnsemblPlants:AT5G19840EnsemblPlants:AT5G19840.1entrez:832104
ExpressionAtlas:F4K2M7GeneID:832104Gramene:AT5G19840.1hmmpanther:PTHR12461
hmmpanther:PTHR12461:SF16InterPro:IPR003347Pfam:PF13621Pfscan:PS51184
PRIDE:F4K2M7PROSITE:PS51184ProteinModelPortal:F4K2M7Proteomes:UP000006548
RefSeq:NP_197485.2SMART:SM00558SMR:F4K2M7SUPFAM:SSF51197
TAIR:AT5G19840UniGene:At.31247UniGene:At.66697UniProt:F4K2M7
Coordinates (TAIR10) chr5:+:6705372..6709382
Molecular Weight (calculated) 57134.30 Da
IEP (calculated) 5.01
GRAVY (calculated) -0.36
Length 505 amino acids
Sequence (TAIR10)
(BLAST)
001: MPTGCEFPMI KTFENALTAA DFESTVELTN FPAVFRGCAS VWDAYSKWNP FNSGLDYLEE RAGSVEVEAM LSRTAPVFNG DIRSHERVSL PFSDFIRFCK
101: QHMRGKGNGS GVDAKSADLN PMCEDYRPGQ IYLAQFPILN DEKEEKVLLK ILRQDIQTPT FLDAKSLSSI NFWMNSAEAR SSTHYDPHHN LLCVVSGRKK
201: VVLWPPSASP SLYPMPIYGE ASNHSSVGLE NPNLSDYPRA EHSLKQSQEI TLNAGDAVFI PEGWFHQVDS DELTVAVNFW WQSNYMSNMP EHMDSYYLRR
301: ITRRLIDREM SLLVSKPSST DLRHLSEHID QSRIEMAEGG NDNIGNESIK KGLSTLHEKA SLHDLDPSAS QALHDLISLV HDHVNAVDTK DDRVAHLLWN
401: LEASRLRDVL LAMARYFPRT LEALILHMLS PIAAEVLTQK FDEIDQQTGE EDRTQFFREF YSAFDDEAAA MDIILSRKEA FAFQAFKNVL DKFLGVNIAS
501: PTTNI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)