AT2G48110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.827 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : reduced epidermal fluorescence 4 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a novel protein of unknown function with homologs in non-seed plants. Sequence analysis predicts membrane spanning domains and a putative protein-protein interaction domain. Semi-dominant mutations display defects in phenylpropanoid accumulation suggesting a role in phenylpropanoid metabolism. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
REDUCED EPIDERMAL FLUORESCENCE 4 (REF4); BEST Arabidopsis thaliana protein match is: REF4-related 1 (TAIR:AT3G23590.1); Has 140 Blast hits to 138 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:19673370..19679494 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 139571.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.48 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.18 | ||||||||||||||||||||||||||||||||||||
| Length | 1275 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAPSEFQPSL WESVTSLIRS AQEKNVDPLH WALQLRLTLA SAGISLPSPD LAQFLVTHIF WENHSPLSWK LLEKAISVNI VPPLLVLALL SPRVIPNRKL 0101: HPAAYRLYME LLKRHAFSFM PLIRAPGYHK TMNSIDDILH LSETFGVQDQ EPGSILLAFV FSIVWELLDA SLDEEGLLEL TSNKRSKWPS SPHDMDLDGL 0201: ENSVKRNENH DALEKANTEM AIELIQEFLQ NKVTSRILHL ASQNMESKTI PRGEFHAIVS SGSKLALTSD SALWLPIDLF FEDIMDGTQA AAASAVENLT 0301: GLVKALQAAN STSWHDAFLA LWLAALRLVQ RENLCLRYCF FMHMLEILSE ERDPIEGPVP RTDTFLCVLL SVTPLAVANI IEEEESQWID QTSSSPSNQW 0401: KEKKGKCRQG LINSLQQLGD YESLLTPPRS VQSVANQAAA KAIMFISGIT NSNGSYENTS MSESASGCCK VRFSLFTLKM FVVMGVYLLC NISCWSLVMK 0501: GSPLTPSLTN SLITTPASSL AEIEKMYEVA TTGSEDEKIA VASILCGASL FRGWSIQEHV IIFIVTLLSP PAPADLSGSY SHLINSAPFL NVLLVGISPI 0601: DCVHIFSLHG VVPLLAGALM PICEAFGSGV PNITWTLPTG ELISSHAVFS TAFTLLLRLW RFDHPPLDYV LGDVPPVGPQ PSPEYLLLVR NCRLECFGKS 0701: PKDRMARRRF SKVIDISVDP IFMDSFPRLK QWYRQHQECM ASILSELKTG SPVHHIVDSL LSMMFKKANK GGSQSLTPSS GSSSLSTSGG DDSSDQLKLP 0801: AWDILEAAPF VLDAALTACA HGSLSPRELA TGLKILADFL PATLGTMVSY FSSEVTRGLW KPVSMNGTDW PSPAANLASV EQQIEKILAA TGVDVPRLPA 0901: DGISAATLPL PLAALVSLTI TYKLDKATER FLVLVGPALD SLAAACPWPC MPIVTSLWTQ KVKRWSDFLI FSASRTVFHH NRDAVIQLLR SCFTCTLGLT 1001: PTSQLCSYGG VGALLGHGFG SRYSGGISTA APGILYIKVH RSIRDVMFLT EEILSLLMFS VKSIATRELP AGQAEKLKKT KDGSRYGIGQ VSLSLAMRRV 1101: KLAASLGASL VWISGGLNLV QALIKETLPS WFISVHGEED ELGGMVPMLR GYALAYFAIL SSAFAWGVDS SYPASKRRPR VLWLHLEFMV SALEGKISLG 1201: CDWATWQAYV TGFVSLMVQC TPAWVLEVDV EVIKRLSKSL RQWNEQDLAL ALLCAGGLGT MGAATELIVE TCHQH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)