AT4G00340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor-like protein kinase 4 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a receptor-like protein kinase that is expressed in roots. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
receptor-like protein kinase 4 (RLK4); FUNCTIONS IN: sugar binding, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT2G19130.1); Has 118915 Blast hits to 117390 proteins in 4385 species: Archae - 97; Bacteria - 13085; Metazoa - 43904; Fungi - 9417; Plants - 35014; Viruses - 433; Other Eukaryotes - 16965 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:148958..151496 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90832.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.00 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||
| Length | 818 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPCTTYLPLL LLLFLLPPPS VQSKVIIKGN QTILSFKAIF RLGFFSTTNG SSNWYLGISY ASMPTPTHVW VANRIRPVSD PDSSTLELTS TGYLIVSNLR 101: DGVVWQTDNK QPGTDFRFSE TGNLILINDD GSPVWQSFDN PTDTWLPGMN VTGLTAMTSW RSLFDPSPGF YSLRLSPSFN EFQLVYKGTT PYWSTGNWTG 201: EAFVGVPEMT IPYIYRFHFV NPYTPTASFW YIVPPLDSVS EPRLTRFMVG ANGQLKQYTW DPQTQSWNMF WLQPEDPCRV YNLCGQLGFC SSELLKPCAC 301: IRGFRPRNDA AWRSDDYSDG CRRENGDSGE KSDTFEAVGD LRYDGDVKMS RLQVSKSSCA KTCLGNSSCV GFYHKEKSNL CKILLESPNN LKNSSSWTGV 401: SEDVLYIREP KKGNSKGNIS KSIIILCSVV GSISVLGFTL LVPLILLKRS RKRKKTRKQD EDGFAVLNLK VFSFKELQSA TNGFSDKVGH GGFGAVFKGT 501: LPGSSTFVAV KRLERPGSGE SEFRAEVCTI GNIQHVNLVR LRGFCSENLH RLLVYDYMPQ GSLSSYLSRT SPKLLSWETR FRIALGTAKG IAYLHEGCRD 601: CIIHCDIKPE NILLDSDYNA KVSDFGLAKL LGRDFSRVLA TMRGTWGYVA PEWISGLPIT TKADVYSFGM TLLELIGGRR NVIVNSDTLG EKETEPEKWF 701: FPPWAAREII QGNVDSVVDS RLNGEYNTEE VTRMATVAIW CIQDNEEIRP AMGTVVKMLE GVVEVTVPPP PKLIQALVSG DSYRGVSGTS CSEGHGCSDL 801: NTGLSSPGSR SSFGRPSP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)