AT3G19100.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:endoplasmic reticulum 0.998 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Protein kinase superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Protein kinase superfamily protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Calcium-dependent protein kinase (CDPK) family protein (TAIR:AT1G49580.1); Has 120241 Blast hits to 118384 proteins in 3609 species: Archae - 140; Bacteria - 14458; Metazoa - 44881; Fungi - 12679; Plants - 26503; Viruses - 512; Other Eukaryotes - 21068 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:6605681..6608980 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 67210.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.34 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 599 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGGCTSKPSS SVKPNPYAPK DAVLQNDDST PAHPGKSPVR SSPAVKASPF FPFYTPSPAR HRRNKSRDGG GGESKSVTST PLRQLARAFH PPSPARHIRD 101: VLRRRKEKKE AALPAARQQK EEEEREEVGL DKRFGFSKEL QSRIELGEEI GRGHFGYTCS AKFKKGELKD QEVAVKVIPK SKMTSAISIE DVRREVKILR 201: ALSGHQNLVQ FYDAFEDNAN VYIVMELCGG GELLDRILAR GGKYSEDDAK AVLIQILNVV AFCHLQGVVH RDLKPENFLY TSKEENSMLK VIDFGLSDFV 301: RPDERLNDIV GSAYYVAPEV LHRSYTTEAD VWSIGVIAYI LLCGSRPFWA RTESGIFRAV LKADPSFDEP PWPSLSFEAK DFVKRLLYKD PRKRMTASQA 401: LMHPWIAGYK KIDIPFDILI FKQIKAYLRS SSLRKAALMA LSKTLTTDEL LYLKAQFAHL APNKNGLITL DSIRLALATN ATEAMKESRI PDFLALLNGL 501: QYKGMDFEEF CAASISVHQH ESLDCWEQSI RHAYELFEMN GNRVIVIEEL ASELGVGSSI PVHTILNDWI RHTDGKLSFL GFVKLLHGVS TRQSLAKTR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)