AT5G42620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.964 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : metalloendopeptidases;zinc ion binding | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
metalloendopeptidases;zinc ion binding; FUNCTIONS IN: metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, cell adhesion; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EGF, extracellular (InterPro:IPR013111), EGF-like (InterPro:IPR006210), EGF-like, type 3 (InterPro:IPR000742), EGF-like region, conserved site (InterPro:IPR013032), Peptidase M8, leishmanolysin (InterPro:IPR001577); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:17066630..17071045 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93204.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.13 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 841 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEVLVPCCRL FVSNLRFVIS WVSLILLLLG ASDAKARHHH HHHQRIAVEG VESGVASHSC IHDQIIEQRK RPGRKVYSVT PQVYHEPRSV EKAFHHNGRV 101: LLSVFDEEKD VKQPIRIYLN YDAVGHSLDR DCQRVGNIVK LGEPPSSTFP AVPACNPNTK PPVSGDCWYN CTLDDISGKD KKHRLRKALE QTADWFRRAL 201: AVEPVKGNLR LSGYSACGQD GGVQLPREYV EEGIADTDLV LLVTTRPTTG NTLAWAVACE RDQWGRAIAG HVNVAPRHLT SESGTLLSAT LIHEVMHVLG 301: FDPHAFAHFR DERKRRRTEV TEQQMDEKLG RLVTRVVLPR VVMHSRHHYG AFSQNFSGLE LEDGGGRGTS GSHWEKRLLM NEIMTGSVDT RSVVSKMTLA 401: LLEDSGWYKA NYSMADRLDW GRNQGTQFVT SPCNMWKGAY HCNTTQLSGC TYNREAEGYC PILSYNGELP QWARYFPQPN KGGQSSLADY CTYFVAYSDG 501: SCTDINSARA PDRMLGEVRG SESRCMASSL VRTGFVRGSM TQGNGCYQHR CRNNLLEVAV EGVWKFCPQA GGPIRFPGFN GELICPAYHE LCSTSVVSVL 601: GQCPNSCNFN GDCVDGKCRC LLGYHGHDCR NRSCPNNCNG HGKCTTQGVC ICENGFTGID CSTAICDEQC SLHGGVCDNG VCEFRCSDYA GYTCQNSSKL 701: VTSLLVCKDV LEKDMSGQHC APREPSILQQ LEEVVVMPNY NRLFPGGARK LFNIFGNSYC DEAAKRLACW ISIQKCDIDG DDRLRVCHSA CQSYNMACGA 801: SLDCSDQTLF STAEEGDAEC TGSGEIRSPW FSSLWSRLVA S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)