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AT1G07705.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NOT2 / NOT3 / NOT5 family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NOT2 / NOT3 / NOT5 family; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282); BEST Arabidopsis thaliana protein match is: VIRE2 interacting protein 2 (TAIR:AT5G59710.1); Has 2858 Blast hits to 2245 proteins in 417 species: Archae - 0; Bacteria - 989; Metazoa - 670; Fungi - 343; Plants - 147; Viruses - 8; Other Eukaryotes - 701 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5601eggNOG:KOG2151EMBL:AK229253EMBL:CP002684
EnsemblPlants:AT1G07705EnsemblPlants:AT1G07705.1entrez:837284ExpressionAtlas:Q0WP31
GeneID:837284GO:GO:0005634GO:GO:0006355Gramene:AT1G07705.1
hmmpanther:PTHR23326hmmpanther:PTHR23326:SF3HOGENOM:HOG000005739InterPro:IPR007282
ncoils:CoilPfam:PF04153PhylomeDB:Q0WP31Proteomes:UP000006548
RefSeq:NP_563795.3SMR:Q0WP31STRING:3702.AT1G07705.2TAIR:AT1G07705
UniGene:At.42289UniProt:Q0WP31
Coordinates (TAIR10) chr1:+:2382090..2385282
Molecular Weight (calculated) 57409.20 Da
IEP (calculated) 7.65
GRAVY (calculated) -0.40
Length 546 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSLLNSSIN GSTSNLSDGS GRTFTSSFSG QSGAASPVFH HAGSIQGLHN IHGNFNVPNL AGSLGSRNSS LNGVPSAGVQ QQNGSISNGR FASSNIPVAL
101: SQMSHGSSHG HSGLTNRGGL GVSPILGNVG SRMTSSMGNM VGGGTMGRTL SSGGGLSIPS LGSRLNLAVN SGSGNIGQNR MMGGVLPQGS PQVLSMLGNS
201: YPSAGGLSQN HVQAMNSLSS MGLLNDMNSN DTSPFDINND FPQLTSRPSS AGSQGQLGSR LKQGLGISPI VQQNQEFSIQ NEDFPALPGY KGSSADYPMD
301: LHHKEQLHEN SVLMMQSQQL SMGRSGGFNL GGAYTSHRPQ QQQQHAQAVS SSGVSLHGSD IFSSSHPPYH SQTGGAPGIG LRSMNSANSI TGMGYDQQLI
401: QQYQHQQNSA QYRLQQMSAA SQPFRDVGLK SMQSTQSNPD RFGLLGLLSV IKMSDPDLTS LALGIDLTTL GLNLNSTENL HKTFGSPWSN EPSKVDPEFS
501: VPQCYYAKNP PPLHQGLFAK LLVETLFYVF YSMPKDEAQL YAANEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)