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AT2G45810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.547
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DEA(D/H)-box RNA helicase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT3G61240.2); Has 68232 Blast hits to 53527 proteins in 3291 species: Archae - 672; Bacteria - 23017; Metazoa - 14526; Fungi - 7874; Plants - 4320; Viruses - 271; Other Eukaryotes - 17552 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2367-MONOMERBioGrid:4525EC:3.6.4.13eggNOG:ENOG410XRAZ
eggNOG:KOG0326EMBL:AC004665EMBL:AJ010459EMBL:AY039862
EMBL:BT002709EMBL:CP002685EnsemblPlants:AT2G45810EnsemblPlants:AT2G45810.1
entrez:819189Gene3D:3.40.50.300GeneID:819189Genevisible:Q94BV4
GO:GO:0000932GO:GO:0003723GO:GO:0004386GO:GO:0005524
GO:GO:0005829GO:GO:0006397GO:GO:0006417GO:GO:0051028
Gramene:AT2G45810.1hmmpanther:PTHR24031hmmpanther:PTHR24031:SF254HOGENOM:HOG000268797
InParanoid:Q94BV4IntAct:Q94BV4InterPro:IPR000629InterPro:IPR001650
InterPro:IPR011545InterPro:IPR014001InterPro:IPR014014InterPro:IPR027417
iPTMnet:Q94BV4KEGG:ath:AT2G45810KO:K12614ncoils:Coil
OMA:YLKIEVMPaxDb:Q94BV4Pfam:PF00270Pfam:PF00271
Pfam:Q94BV4Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195
PhylomeDB:Q94BV4PIR:T02466PIR:T51740PRIDE:Q94BV4
PRO:PR:Q94BV4PROSITE:PS00039PROSITE:PS51192PROSITE:PS51194
PROSITE:PS51195ProteinModelPortal:Q94BV4Proteomes:UP000006548Reactome:R-ATH-430039
RefSeq:NP_182105.1scanprosite:PS00039SMART:SM00487SMART:SM00490
SMR:Q94BV4STRING:3702.AT2G45810.1SUPFAM:SSF52540TAIR:AT2G45810
UniGene:At.46UniProt:Q94BV4
Coordinates (TAIR10) chr2:+:18859836..18862318
Molecular Weight (calculated) 60424.30 Da
IEP (calculated) 7.66
GRAVY (calculated) -0.54
Length 528 amino acids
Sequence (TAIR10)
(BLAST)
001: MNNNNNNRGR FPPGIGAAGP GPDPNFQSRN PNPPQPQQYL QSRTPFPQQP QPQPPQYLQS QSDAQQYVQR GYPQQIQQQQ QLQQQQQQQQ QQQEQQWSRR
101: AQLPGDPSYI DEVEKTVQSE AISDSNNEDW KATLKLPPRD NRYQTEDVTA TKGNEFEDYF LKRDLLRGIY EKGFEKPSPI QEESIPIALT GSDILARAKN
201: GTGKTGAFCI PTLEKIDPEN NVIQAVILVP TRELALQTSQ VCKELSKYLK IEVMVTTGGT SLRDDIMRLY QPVHLLVGTP GRILDLAKKG VCVLKDCAML
301: VMDEADKLLS VEFQPSIEEL IQFLPESRQI LMFSATFPVT VKSFKDRYLK KPYIINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS
401: VNRVELLAKK ITELGYSCFY IHAKMVQDHR NRVFHDFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR
501: FKMYQTEQEL GTEIKPIPSL IDKAIYCQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)