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AT1G26110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : decapping 5
Curator
Summary (TAIR10)
Encodes Decapping 5, required for mRNA decapping, P-body formation and translational repression during postembryonic development.
Computational
Description (TAIR10)
decapping 5 (DCP5); CONTAINS InterPro DOMAIN/s: DFDF motif (InterPro:IPR019050), FFD/TFG box motif (InterPro:IPR019053); BEST Arabidopsis thaliana protein match is: decapping 5-like (TAIR:AT5G45330.1); Has 46741 Blast hits to 20189 proteins in 1086 species: Archae - 36; Bacteria - 10029; Metazoa - 17132; Fungi - 5632; Plants - 6968; Viruses - 649; Other Eukaryotes - 6295 (source: NCBI BLink).
Protein Annotations
BioGrid:24389eggNOG:ENOG41122RAeggNOG:KOG1073EMBL:AC079829
EMBL:AC084221EMBL:AF361833EMBL:AK317540EMBL:AY078047
EMBL:AY093191EMBL:CP002684EnsemblPlants:AT1G26110EnsemblPlants:AT1G26110.1
entrez:839152GeneID:839152Genevisible:Q9C658GO:GO:0000932
GO:GO:0005829GO:GO:0006397GO:GO:0010606GO:GO:0017148
GO:GO:0031087GO:GO:0033962GO:GO:0042803hmmpanther:PTHR13586
HOGENOM:HOG000029862InParanoid:Q9C658IntAct:Q9C658InterPro:IPR010920
InterPro:IPR019050InterPro:IPR025609InterPro:IPR025761InterPro:IPR025762
InterPro:IPR025768iPTMnet:Q9C658KEGG:ath:AT1G26110KO:K18749
MINT:MINT-8393429OMA:GSHNGQSPaxDb:Q9C658Pfam:PF09532
Pfam:PF12701Pfam:Q9C658Pfscan:PS51512Pfscan:PS51513
Pfscan:PS51536PhylomeDB:Q9C658PIR:B86387PRIDE:Q9C658
PRO:PR:Q9C658PROSITE:PS51512PROSITE:PS51513PROSITE:PS51536
ProteinModelPortal:Q9C658Proteomes:UP000006548RefSeq:NP_001154367.1RefSeq:NP_564239.1
SMART:SM01199SMART:SM01271SMR:Q9C658STRING:3702.AT1G26110.1
SUPFAM:SSF50182TAIR:AT1G26110tair10-symbols:DCP5UniGene:At.21105
UniGene:At.73006UniProt:Q9C658
Coordinates (TAIR10) chr1:-:9024616..9027556
Molecular Weight (calculated) 64373.70 Da
IEP (calculated) 7.93
GRAVY (calculated) -0.66
Length 611 amino acids
Sequence (TAIR10)
(BLAST)
001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKP NGHSFPNHNG YRGRGRGRGR GAGRSHQVMK FTEDFDFTAM NEKFNKDEVW GHLGKSTTLD GDEDDDSPTV
501: DEAELPKIEA KPVYNKDDFF DSLSSNTIDR ESQNSRPRFS EQRKLDTETF GEFSRFRGGR GGRGGYGRNN GYSRGGYGGR GYGGYGGRGG GGGGYGYGGR
601: GQGRGVSNRT T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)