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AT1G43190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.940
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : polypyrimidine tract-binding protein 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
polypyrimidine tract-binding protein 3 (PTB3); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: regulation of RNA splicing, regulation of translation; LOCATED IN: nucleus, cytoplasmic mRNA processing body, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), HnRNP-L/PTB/hephaestus splicing factor (InterPro:IPR006536), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: polypyrimidine tract-binding protein 1 (TAIR:AT3G01150.1); Has 2350 Blast hits to 1929 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 1455; Fungi - 41; Plants - 581; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).
Protein Annotations
BioGrid:26143eggNOG:ENOG410XPMZeggNOG:KOG1190EMBL:AC005687
EMBL:BT014899EMBL:BT015028EMBL:CP002684EnsemblPlants:AT1G43190
EnsemblPlants:AT1G43190.1EnsemblPlants:AT1G43190.2entrez:840918ExpressionAtlas:Q6ICX4
Gene3D:3.30.70.330GeneID:840918Genevisible:Q6ICX4GO:GO:0000166
GO:GO:0000932GO:GO:0003723GO:GO:0005634GO:GO:0005737
GO:GO:0006397GO:GO:0006417GO:GO:0008380GO:GO:0043484
HOGENOM:HOG000231699InParanoid:Q6ICX4InterPro:IPR000504InterPro:IPR012677
KEGG:ath:AT1G43190KO:K14948ncoils:CoilOMA:NIHGRED
PaxDb:Q6ICX4Pfam:PF00076Pfam:PF13893Pfam:PF14259
Pfam:Q6ICX4Pfscan:PS50102PhylomeDB:Q6ICX4PRIDE:Q6ICX4
PRO:PR:Q6ICX4PROSITE:PS50102ProteinModelPortal:Q6ICX4Proteomes:UP000006548
Reactome:R-ATH-72163RefSeq:NP_001077672.1RefSeq:NP_175010.2SMART:SM00360
SMR:Q0WQH0SMR:Q6ICX4STRING:3702.AT1G43190.1SUPFAM:SSF54928
TAIR:AT1G43190tair10-symbols:PTB3UniGene:At.22472UniProt:Q0WQH0
UniProt:Q6ICX4
Coordinates (TAIR10) chr1:-:16275432..16278185
Molecular Weight (calculated) 48236.40 Da
IEP (calculated) 6.83
GRAVY (calculated) -0.27
Length 432 amino acids
Sequence (TAIR10)
(BLAST)
001: MAESSKVVHV RNVGHEISEN DLLQLFQPFG VITKLVMLRA KNQALLQMQD VSSAVSALQF FTNVQPTIRG RNVYVQFSSH QELTTIEQNI HGREDEPNRI
101: LLVTIHHMLY PITVDVLHQV FSPYGFVEKL VTFQKSAGFQ ALIQYQVQQC AASARTALQG RNIYDGCCQL DIQFSNLEEL QVNYNNDRSR DYTNPNLPAE
201: QKGRSSHPCY GDTGVAYPQM ANTSAIAAAF GGGLPPGITG TNDRCTVLVS NLNADSIDED KLFNLFSLYG NIVRIKLLRN KPDHALVQMG DGFQAELAVH
301: FLKGAMLFGK RLEVNFSKHP NITPGTDSHD YVNSNLNRFN RNAAKNYRYC CSPTKMIHLS TLPQDVTEEE VMNHVQEHGA VVNTKVFEMN GKKQALVQFE
401: NEEEAAEALV CKHATSLGGS IIRISFSQLQ TI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)