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AT4G14342.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Splicing factor 3B subunit 5/RDS3 complex subunit 10
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Splicing factor 3B subunit 5/RDS3 complex subunit 10; CONTAINS InterPro DOMAIN/s: Splicing factor 3B subunit 5/RDS3 complex subunit 10 (InterPro:IPR009846), Splicing factor 3B, subunit 5 (InterPro:IPR017089); BEST Arabidopsis thaliana protein match is: Splicing factor 3B subunit 5/RDS3 complex subunit 10 (TAIR:AT3G23325.1); Has 333 Blast hits to 333 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 97; Plants - 62; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Protein Annotations
BioGrid:12374DNASU:827077eggNOG:ENOG4111NTVeggNOG:KOG3485
EMBL:AL161538EMBL:AY064021EMBL:AY123001EMBL:CP002687
EMBL:Z97336EnsemblPlants:AT4G14342EnsemblPlants:AT4G14342.1entrez:827077
ExpressionAtlas:P58728GeneID:827077Gramene:AT4G14342.1hmmpanther:PTHR20978
hmmpanther:PTHR20978:SF0HOGENOM:HOG000210519InParanoid:P58728InterPro:IPR009846
InterPro:IPR017089KEGG:ath:AT4G14342KO:K12832OMA:QSKYVGT
PANTHER:PTHR20978PaxDb:P58728Pfam:P58728Pfam:PF07189
PhylomeDB:P58728PIRSF:PIRSF037010PRIDE:P58728PRO:PR:P58728
Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72165RefSeq:NP_849379.1
STRING:3702.AT4G14342.1TAIR:AT4G14342UniGene:At.27417UniProt:P58728
UniProt:Q541W1
Coordinates (TAIR10) chr4:-:8253789..8255405
Molecular Weight (calculated) 10161.90 Da
IEP (calculated) 5.06
GRAVY (calculated) -0.61
Length 87 amino acids
Sequence (TAIR10)
(BLAST)
1: MQASDRFNIN SQLEHLQAKY VGTGHADLSR FEWAVNIQRD SYASYIGHYP MLSYFAIAEN ESIGRERYNF MQKMLLPCGL PPEREEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)