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AT1G55140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribonuclease III family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribonuclease III family protein; FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT3G13740.1); Has 1541 Blast hits to 1540 proteins in 746 species: Archae - 0; Bacteria - 1385; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1939eggNOG:ENOG410IG34EMBL:AK175163EMBL:BT010444
EMBL:CP002684EnsemblPlants:AT1G55140EnsemblPlants:AT1G55140.1entrez:841957
ExpressionAtlas:Q6NQK8Gene3D:1.10.1520.10GeneID:841957GO:GO:0003723
GO:GO:0004525GO:GO:0006396Gramene:AT1G55140.1hmmpanther:PTHR34276
HOGENOM:HOG000218681InterPro:IPR000999OMA:YEIYARRPfam:PF00636
PhylomeDB:Q6NQK8Proteomes:UP000006548RefSeq:NP_175910.2SMR:Q6NQK8
STRING:3702.AT1G55140.1SUPFAM:SSF69065TAIR:AT1G55140UniGene:At.43071
UniProt:Q6NQK8
Coordinates (TAIR10) chr1:-:20572503..20574332
Molecular Weight (calculated) 26303.20 Da
IEP (calculated) 10.01
GRAVY (calculated) -0.45
Length 237 amino acids
Sequence (TAIR10)
(BLAST)
001: MAILSASSTI VRAALDTQPK LRYNPNAPRN VKKNSNLSSF VPPSSPSSSS PATNLSVSVS DLLKRPASKD IGDGFDDTCV GYEKWFPSPP KVEKPRSVFN
101: AASLAYIGDS IYEIYARRHF LFPPLSIEEY NDRVRAVVRC EAQYALLQKL VDDDFLTKDE RDILRWGKNV GSVKTRSTRR AGVAVYNKAS SLETLIGYLY
201: LSNGKRLEEM MQKLGFSSGS STERMVKEAG SNKPSFK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)