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AT1G04940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : translocon at the inner envelope membrane of chloroplasts 20
Curator
Summary (TAIR10)
Tic20 is believed to function as a component of the protein-conducting channel at the inner envelope membrane. Genes AT1G04940 and AT1G04945 were switched for the TAIR7 genome release to give consistency with MIPs annotation.
Computational
Description (TAIR10)
translocon at the inner envelope membrane of chloroplasts 20 (TIC20); CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109), Chloroplast protein import component Tic20 (InterPro:IPR005691); BEST Arabidopsis thaliana protein match is: HIT-type Zinc finger family protein (TAIR:AT1G04945.3); Has 279 Blast hits to 278 proteins in 76 species: Archae - 0; Bacteria - 100; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKA6eggNOG:ENOG4111GFUEMBL:AC004809EMBL:AK117165
EMBL:CP002684EnsemblPlants:AT1G04940EnsemblPlants:AT1G04940.1entrez:839374
GeneID:839374GO:GO:0008565GO:GO:0009706GO:GO:0016021
GO:GO:0045037Gramene:AT1G04940.1hmmpanther:PTHR33510hmmpanther:PTHR33510:SF6
HOGENOM:HOG000029086InParanoid:Q8GZ79InterPro:IPR005691KEGG:ath:AT1G04940
PaxDb:Q8GZ79Pfam:PF16166Pfam:Q8GZ79PhylomeDB:Q8GZ79
PIR:H86182PRO:PR:Q8GZ79ProteinModelPortal:Q8GZ79Proteomes:UP000006548
RefSeq:NP_171986.3STRING:3702.AT1G04940.1TAIR:AT1G04940tair10-symbols:TIC20
TCDB:3.A.9.1.2TIGRfam:TIGR00994TIGRFAMs:TIGR00994TMHMM:TMhelix
UniGene:At.46000UniProt:Q8GZ79
Coordinates (TAIR10) chr1:+:1399588..1400616
Molecular Weight (calculated) 31205.20 Da
IEP (calculated) 9.83
GRAVY (calculated) 0.18
Length 274 amino acids
Sequence (TAIR10)
(BLAST)
001: MITGYSTPSA HVLMSSRAFK SSSYRAAAGQ TQHYLARSSL PVVKNSWGSP PSPFNELPRV SRGVPLSYLS ASSSLLLNGE QGSLSGTLPV LPVRRKTLLT
101: PRASKDVPSS FRFPPMTKKP QWWWRTLACL PYLMPLHETW MYAETAYHLH PFLEDFEFLT YPFLGAIGRL PSWFLMAYFF VAYLGIVRRK EWPHFFRFHV
201: VMGMLLEIAL QVIGTVSKWM PLGVYWGKFG MHFWTAVAFA YLFTVLESIR CALAGMYADI PFVCDAAYIQ IPYD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)