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AT2G01570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GRAS family transcription factor family protein
Curator
Summary (TAIR10)
Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development.
Computational
Description (TAIR10)
REPRESSOR OF GA1-3 1 (RGA1); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor family protein (TAIR:AT1G14920.1); Has 2724 Blast hits to 2666 proteins in 317 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 4; Plants - 2709; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
BioGrid:89DIP:DIP-32983NeggNOG:ENOG410IQYHeggNOG:ENOG410YBFY
EMBL:AC005560EMBL:AY052239EMBL:AY054160EMBL:BT010467
EMBL:CP002685EMBL:Y11336EMBL:Y15194EnsemblPlants:AT2G01570
EnsemblPlants:AT2G01570.1entrez:814686GeneID:814686Genevisible:Q9SLH3
GO:GO:0000989GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0007275GO:GO:0009740GO:GO:0009938
GO:GO:0010218GO:GO:0042176GO:GO:0044212Gramene:AT2G01570.1
hmmpanther:PTHR31636hmmpanther:PTHR31636:SF50HOGENOM:HOG000238577InParanoid:Q9SLH3
IntAct:Q9SLH3InterPro:IPR005202InterPro:IPR021914InterPro:IPR030006
iPTMnet:Q9SLH3KEGG:ath:AT2G01570KO:K14494MINT:MINT-8068545
ncoils:CoilOMA:DKMMMVKPANTHER:PTHR31636:SF50PaxDb:Q9SLH3
Pfam:PF03514Pfam:PF12041Pfam:Q9SLH3Pfscan:PS50985
PhylomeDB:Q9SLH3PIR:D84426PRIDE:Q9SLH3PRO:PR:Q9SLH3
PROSITE:PS50985ProteinModelPortal:Q9SLH3Proteomes:UP000006548RefSeq:NP_178266.1
SMR:Q9SLH3STRING:3702.AT2G01570.1TAIR:AT2G01570tair10-symbols:RGA
tair10-symbols:RGA1UniGene:At.24012UniProt:Q9SLH3
Coordinates (TAIR10) chr2:-:255581..257344
Molecular Weight (calculated) 64039.00 Da
IEP (calculated) 5.67
GRAVY (calculated) -0.22
Length 587 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL GYKVRSSEMA EVALKLEQLE TMMSNVQEDG LSHLATDTVH YNPSELYSWL
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)