suba logo
AT5G43270.2
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : squamosa promoter binding protein-like 2
Curator
Summary (TAIR10)
member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. In conjunction with SPL10 and SPL11, SPL2 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase.
Computational
Description (TAIR10)
squamosa promoter binding protein-like 2 (SPL2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 10 (TAIR:AT1G27370.4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJAHeggNOG:ENOG410YKP9EMBL:AB017070EMBL:AJ011624
EMBL:AJ011625EMBL:AJ011626EMBL:AK230160EMBL:BT025984
EMBL:CP002688EnsemblPlants:AT5G43270EnsemblPlants:AT5G43270.1EnsemblPlants:AT5G43270.2
EnsemblPlants:AT5G43270.3entrez:834345Gene3D:4.10.1100.10GeneID:834345
Genevisible:Q9S840GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0044212GO:GO:0046872GO:GO:0048510
GO:GO:0048653Gramene:AT5G43270.1Gramene:AT5G43270.2Gramene:AT5G43270.3
hmmpanther:PTHR31251hmmpanther:PTHR31251:SF1HOGENOM:HOG000070897InParanoid:Q9S840
InterPro:IPR004333KEGG:ath:AT5G43270OMA:MECNAKPPaxDb:Q9S840
Pfam:PF03110Pfam:Q9S840Pfscan:PS51141PhylomeDB:Q9S840
PIR:T52603PIR:T52604PRIDE:Q9S840PRO:PR:Q9S840
PROSITE:PS51141ProteinModelPortal:Q9S840Proteomes:UP000006548RefSeq:NP_199141.1
RefSeq:NP_851122.1RefSeq:NP_974875.1SMR:Q9S840STRING:3702.AT5G43270.1
SUPFAM:SSF103612TAIR:AT5G43270tair10-symbols:SPL2UniGene:At.47249
UniProt:Q9S840
Coordinates (TAIR10) chr5:-:17360527..17362143
Molecular Weight (calculated) 46862.70 Da
IEP (calculated) 8.77
GRAVY (calculated) -0.68
Length 419 amino acids
Sequence (TAIR10)
(BLAST)
001: MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)