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AT1G66350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RGA-like 1
Curator
Summary (TAIR10)
Negative regulator of GA responses, member of GRAS family of transcription factors. Also belongs to the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. RGL1 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Involved in flower and fruit development.
Computational
Description (TAIR10)
RGA-like 1 (RGL1); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: RGA-like 2 (TAIR:AT3G03450.1); Has 2708 Blast hits to 2634 proteins in 311 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2704; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:28174DIP:DIP-37660NeggNOG:ENOG410JV2GeggNOG:ENOG41106AQ
EMBL:AC020665EMBL:AJ224957EMBL:AY048749EMBL:AY070035
EMBL:AY096506EMBL:CP002684EnsemblPlants:AT1G66350EnsemblPlants:AT1G66350.1
entrez:842953GeneID:842953Genevisible:Q9C8Y3GO:GO:0000989
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009739
GO:GO:0009740GO:GO:0009908GO:GO:0009938GO:GO:0030154
Gramene:AT1G66350.1hmmpanther:PTHR31636hmmpanther:PTHR31636:SF47HOGENOM:HOG000238577
InParanoid:Q9C8Y3IntAct:Q9C8Y3InterPro:IPR005202InterPro:IPR021914
InterPro:IPR030006KEGG:ath:AT1G66350KO:K14494OMA:WRINRVE
PANTHER:PTHR31636:SF47PaxDb:Q9C8Y3Pfam:PF03514Pfam:PF12041
Pfam:Q9C8Y3Pfscan:PS50985PhylomeDB:Q9C8Y3PIR:G96688
PRIDE:Q9C8Y3PRO:PR:Q9C8Y3PROSITE:PS50985ProteinModelPortal:Q9C8Y3
Proteomes:UP000006548RefSeq:NP_176809.1SMR:Q9C8Y3STRING:3702.AT1G66350.1
TAIR:AT1G66350tair10-symbols:RGLtair10-symbols:RGL1UniGene:At.26400
UniGene:At.75607UniProt:Q9C8Y3
Coordinates (TAIR10) chr1:+:24748327..24749862
Molecular Weight (calculated) 56757.50 Da
IEP (calculated) 5.47
GRAVY (calculated) -0.20
Length 511 amino acids
Sequence (TAIR10)
(BLAST)
001: MKREHNHRES SAGEGGSSSM TTVIKEEAAG VDELLVVLGY KVRSSDMADV AHKLEQLEMV LGDGISNLSD ETVHYNPSDL SGWVESMLSD LDPTRIQEKP
101: DSEYDLRAIP GSAVYPRDEH VTRRSKRTRI ESELSSTRSV VVLDSQETGV RLVHALLACA EAVQQNNLKL ADALVKHVGL LASSQAGAMR KVATYFAEGL
201: ARRIYRIYPR DDVALSSFSD TLQIHFYESC PYLKFAHFTA NQAILEVFAT AEKVHVIDLG LNHGLQWPAL IQALALRPNG PPDFRLTGIG YSLTDIQEVG
301: WKLGQLASTI GVNFEFKSIA LNNLSDLKPE MLDIRPGLES VAVNSVFELH RLLAHPGSID KFLSTIKSIR PDIMTVVEQE ANHNGTVFLD RFTESLHYYS
401: SLFDSLEGPP SQDRVMSELF LGRQILNLVA CEGEDRVERH ETLNQWRNRF GLGGFKPVSI GSNAYKQASM LLALYAGADG YNVEENEGCL LLGWQTRPLI
501: ATSAWRINRV E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)