suba logo
AT5G27320.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.758
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4.
Computational
Description (TAIR10)
GA INSENSITIVE DWARF1C (GID1C); FUNCTIONS IN: hydrolase activity; INVOLVED IN: floral organ morphogenesis, raffinose family oligosaccharide biosynthetic process, positive regulation of gibberellic acid mediated signaling pathway, response to gibberellin stimulus, gibberellin mediated signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G05120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G27320-MONOMERBioGrid:18064DIP:DIP-37663NEC:3.-.-.-
eggNOG:COG0657eggNOG:KOG1515EMBL:AC007123EMBL:AY054653
EMBL:AY128729EMBL:CP002688EnsemblPlants:AT5G27320EnsemblPlants:AT5G27320.1
entrez:832790ESTHER:arath-AT5G27320Gene3D:3.40.50.1820GeneID:832790
Genevisible:Q940G6GO:GO:0005634GO:GO:0009739GO:GO:0009740
GO:GO:0009939GO:GO:0010476GO:GO:0016787GO:GO:0048444
Gramene:AT5G27320.1hmmpanther:PTHR23024hmmpanther:PTHR23024:SF227HOGENOM:HOG000152323
InParanoid:Q940G6IntAct:Q940G6InterPro:IPR002168InterPro:IPR013094
InterPro:IPR029058InterPro:IPR033140KEGG:ath:AT5G27320KO:K14493
MEROPS:S09.A10OMA:AVPIHTWPaxDb:Q940G6Pfam:PF07859
Pfam:Q940G6PhylomeDB:Q940G6PRIDE:Q940G6PRO:PR:Q940G6
PROSITE:PS01173PROSITE:PS01174ProteinModelPortal:Q940G6Proteomes:UP000006548
RefSeq:NP_198084.1scanprosite:PS01173scanprosite:PS01174SMR:Q940G6
STRING:3702.AT5G27320.1SUPFAM:SSF53474TAIR:AT5G27320tair10-symbols:ATGID1C
tair10-symbols:GID1CUniGene:At.22176UniProt:Q940G6
Coordinates (TAIR10) chr5:+:9629254..9630746
Molecular Weight (calculated) 38427.70 Da
IEP (calculated) 7.16
GRAVY (calculated) -0.17
Length 344 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGSEEVNLI ESKTVVPLNT WVLISNFKLA YNLLRRPDGT FNRHLAEFLD RKVPANANPV NGVFSFDVII DRQTNLLSRV YRPADAGTSP SITDLQNPVD
101: GEIVPVIVFF HGGSFAHSSA NSAIYDTLCR RLVGLCGAVV VSVNYRRAPE NRYPCAYDDG WAVLKWVNSS SWLRSKKDSK VRIFLAGDSS GGNIVHNVAV
201: RAVESRIDVL GNILLNPMFG GTERTESEKR LDGKYFVTVR DRDWYWRAFL PEGEDREHPA CSPFGPRSKS LEGLSFPKSL VVVAGLDLIQ DWQLKYAEGL
301: KKAGQEVKLL YLEQATIGFY LLPNNNHFHT VMDEIAAFVN AECQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)