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AT3G52480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.807
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21515817 (2011): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J4PTeggNOG:ENOG4111DT9EMBL:AL050300EMBL:AY084786
EMBL:BT026347EMBL:CP002686EnsemblPlants:AT3G52480EnsemblPlants:AT3G52480.1
entrez:824413GeneID:824413GO:GO:0016021Gramene:AT3G52480.1
hmmpanther:PTHR34054hmmpanther:PTHR34054:SF1HOGENOM:HOG000090684KEGG:ath:AT3G52480
OMA:ASPPFYTPhylomeDB:Q9SVC9PIR:T08451Proteomes:UP000006548
RefSeq:NP_190816.1STRING:3702.AT3G52480.1TAIR:AT3G52480TMHMM:TMhelix
UniGene:At.35290UniProt:Q9SVC9
Coordinates (TAIR10) chr3:-:19452478..19453107
Molecular Weight (calculated) 23112.80 Da
IEP (calculated) 4.34
GRAVY (calculated) -0.29
Length 209 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLTPTATLL VAVFAFCLVA VTAQFAYVLW WKRRFRRRSI AGSERDAFSS RGGDLTATPP PSKELLYFFL FCLENKQFRI GSATAPPLPA AAPPVNDVAS
101: KWSINGENLL CGPSETLFTI AEDYTSESDH RTGEIDPRGS IFTEDHVKDD EVEEEVVATD ISDDEVDFSH YNQTTPFSTP CASPPFYTPS PSPIRDDLSK
201: TVREESVYG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)