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AT1G23390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Kelch repeat-containing F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Kelch repeat-containing F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G24760.1); Has 146 Blast hits to 146 proteins in 15 species: Archae - 0; Bacteria - 1; Metazoa - 1; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:24186eggNOG:ENOG410IEGKeggNOG:ENOG410YQV9EMBL:AC005292
EMBL:AC007945EMBL:AY084270EMBL:AY120706EMBL:BT000026
EMBL:CP002684EMBL:FM995326EnsemblPlants:AT1G23390EnsemblPlants:AT1G23390.1
entrez:838947ExpressionAtlas:Q9LDE3Gene3D:2.130.10.80GeneID:838947
Genevisible:Q9LDE3Gramene:AT1G23390.1hmmpanther:PTHR24414hmmpanther:PTHR24414:SF35
InParanoid:Q9LDE3IntAct:Q9LDE3InterPro:IPR001810InterPro:IPR015916
KEGG:ath:AT1G23390OMA:VWRIDPIPaxDb:Q9LDE3Pfam:PF00646
Pfam:Q9LDE3PhylomeDB:Q9LDE3PIR:G86367PRIDE:Q9LDE3
PRO:PR:Q9LDE3ProteinModelPortal:Q9LDE3Proteomes:UP000006548RefSeq:NP_564193.1
SMART:SM00256SMR:C4PVQ8SMR:Q9LDE3STRING:3702.AT1G23390.1
SUPFAM:0052715SUPFAM:SSF81383TAIR:AT1G23390UniGene:At.27623
UniGene:At.68686UniGene:At.71472UniProt:C4PVQ8UniProt:Q9LDE3
Coordinates (TAIR10) chr1:-:8309449..8310633
Molecular Weight (calculated) 43880.80 Da
IEP (calculated) 4.75
GRAVY (calculated) -0.15
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKKKNNNNG GDFGEEESSI DGDILESILS YLPLLDLDSA CQVSKSWNRA VFYSLRRLKT MPWLFVYNQR NSPPYTMATM AMAYDPKSEA WIELNTASSP
101: VEHVSVARSS HSTLLYALSP ARFSFSTDAF HLTWQHVAPP RVWRIDPIVA VVGRSLIIAG GVCDFEEDRF AVELFDIESG DGAWERCESM PDFLYESASS
201: TWLSVAVSSE KMYVTEKRSG VTCSFNPVTR SWTKLLDLCP GECSLYSRSI GFSVNRLIMA GIIGDEYNPT GIELWEVIDS DESHLKFESI GSMPETYLEK
301: LRGINSDWPL TSIVLNAVGD MVYVHGAAEN GGEIVAAEIE GGKLCKWRTL PNADATWKKS HAAERVIVAC SNVGFSDLKL AFRNNLSFLS TSKY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)