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AT2G25200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.654
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF868)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF868); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868, plant (InterPro:IPR008586); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF868) (TAIR:AT5G11000.1); Has 283 Blast hits to 283 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 283; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWHReggNOG:ENOG41104WZEMBL:AC007070EMBL:AK175318
EMBL:BT011748EMBL:CP002685EnsemblPlants:AT2G25200EnsemblPlants:AT2G25200.1
entrez:817058GeneID:817058Gramene:AT2G25200.1hmmpanther:PTHR31972
hmmpanther:PTHR31972:SF3HOGENOM:HOG000242823InterPro:IPR008586KEGG:ath:AT2G25200
OMA:RKPDIRVPfam:PF05910PhylomeDB:Q9SIS2PIR:E84645
Proteomes:UP000006548RefSeq:NP_850061.1STRING:3702.AT2G25200.1TAIR:AT2G25200
UniGene:At.39052UniProt:Q9SIS2
Coordinates (TAIR10) chr2:-:10736580..10737644
Molecular Weight (calculated) 40353.30 Da
IEP (calculated) 10.13
GRAVY (calculated) -0.33
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MKISALGRGG SSPLSACFHP SATAINDDLP SALPSPSNPS YISTSGDATT TCQYHTNVGV FFLSWSRSFL RRSLHLHFYS CNSTNCYLHS LDCYRHSIPF
101: AFRLEIKPLT FWRKNGSKKL SRKPDIRVVW DLTHAKFGSG PDPESGFYVA VFVSGEVGLL VGGGNLKQRP RRQILVSKKE NLFGNRVYST KIMIQGKLRE
201: ISIDVKVVND DASLRFSVDD KSVLKISQLQ WKFRGNTKIV IDGVTIQISW DVFNWLFGGK DKVKPDKIPA VFLLRFENQE VEGNDVLMMN KRVRDDVILR
301: KENCRTPSFW ASTYSHWSSS RMSSVMEWSS CREEDERSFG SKSWFSLIIY AWRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)