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AT3G05120.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4. The DELLA region alone can interact with GID1A in GA-dependent manner in a Y2H assay.
Computational
Description (TAIR10)
GA INSENSITIVE DWARF1A (GID1A); FUNCTIONS IN: hydrolase activity; INVOLVED IN: floral organ morphogenesis, raffinose family oligosaccharide biosynthetic process, positive regulation of gibberellic acid mediated signaling pathway, response to gibberellin stimulus, gibberellin mediated signaling pathway; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G27320.1); Has 8768 Blast hits to 8750 proteins in 1436 species: Archae - 107; Bacteria - 5145; Metazoa - 395; Fungi - 775; Plants - 1346; Viruses - 3; Other Eukaryotes - 997 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G05120-MONOMERBioGrid:5009DIP:DIP-37659NDisProt:DP00723
EC:3.-.-.-eggNOG:COG0657eggNOG:KOG1515EMBL:AC009177
EMBL:AY136305EMBL:BT002605EMBL:CP002686EnsemblPlants:AT3G05120
EnsemblPlants:AT3G05120.1entrez:819674ESTHER:arath-gid1EvolutionaryTrace:Q9MAA7
Gene3D:3.40.50.1820GeneID:819674Genevisible:Q9MAA7GO:GO:0005634
GO:GO:0005737GO:GO:0009739GO:GO:0009740GO:GO:0009939
GO:GO:0010331GO:GO:0010476GO:GO:0016787GO:GO:0048444
Gramene:AT3G05120.1hmmpanther:PTHR23024hmmpanther:PTHR23024:SF227HOGENOM:HOG000152323
InParanoid:Q9MAA7IntAct:Q9MAA7InterPro:IPR002168InterPro:IPR013094
InterPro:IPR029058InterPro:IPR033140KEGG:ath:AT3G05120KO:K14493
MEROPS:S09.A10OMA:VMDEISAPaxDb:Q9MAA7PDB:2ZSH
PDB:2ZSIPDBsum:2ZSHPDBsum:2ZSIPfam:PF07859
Pfam:Q9MAA7PhylomeDB:Q9MAA7PRIDE:Q9MAA7PRO:PR:Q9MAA7
PROSITE:PS01173PROSITE:PS01174ProteinModelPortal:Q9MAA7Proteomes:UP000006548
RefSeq:NP_187163.1scanprosite:PS01173scanprosite:PS01174SMR:Q9MAA7
STRING:3702.AT3G05120.1SUPFAM:SSF53474TAIR:AT3G05120tair10-symbols:ATGID1A
tair10-symbols:GID1AUniGene:At.18371UniGene:At.74127UniProt:Q9MAA7
Coordinates (TAIR10) chr3:+:1430682..1432287
Molecular Weight (calculated) 38619.90 Da
IEP (calculated) 6.60
GRAVY (calculated) -0.20
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASDEVNLI ESRTVVPLNT WVLISNFKVA YNILRRPDGT FNRHLAEYLD RKVTANANPV DGVFSFDVLI DRRINLLSRV YRPAYADQEQ PPSILDLEKP
101: VDGDIVPVIL FFHGGSFAHS SANSAIYDTL CRRLVGLCKC VVVSVNYRRA PENPYPCAYD DGWIALNWVN SRSWLKSKKD SKVHIFLAGD SSGGNIAHNV
201: ALRAGESGID VLGNILLNPM FGGNERTESE KSLDGKYFVT VRDRDWYWKA FLPEGEDREH PACNPFSPRG KSLEGVSFPK SLVVVAGLDL IRDWQLAYAE
301: GLKKAGQEVK LMHLEKATVG FYLLPNNNHF HNVMDEISAF VNAEC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)