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AT5G25210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32030.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX9WeggNOG:ENOG411045ZEMBL:AK118298EMBL:BT006118
EMBL:CP002688EnsemblPlants:AT5G25210EnsemblPlants:AT5G25210.1entrez:832592
GeneID:832592Gramene:AT5G25210.1hmmpanther:PTHR35099HOGENOM:HOG000090319
IntAct:Q8GXD2KEGG:ath:AT5G25210OMA:CDENSDHPhylomeDB:Q8GXD2
Proteomes:UP000006548RefSeq:NP_568468.1STRING:3702.AT5G25210.1TAIR:AT5G25210
UniGene:At.43982UniProt:Q8GXD2
Coordinates (TAIR10) chr5:+:8724056..8725465
Molecular Weight (calculated) 19325.90 Da
IEP (calculated) 8.59
GRAVY (calculated) -0.58
Length 175 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSSDDWTKC AMRDGEVVAE LLVKLKEAKV IKNPIVTALR WGIQQPRSRC PRKESESRCS PSTPLSWSGG CGGSSSSPSG YVDGYEATSR QISAVGSRSK
101: NISSLRSPFS ERGIENNNLK RMKMNHIQNL AKDENCKTDG NFLLPDLNIV PCDENSDHYT SLGVETTLYG IRIIR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)