suba logo
AT5G08520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Duplicated homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Homeodomain-like transcriptional regulator (TAIR:AT5G23650.1); Has 2184 Blast hits to 2148 proteins in 187 species: Archae - 0; Bacteria - 10; Metazoa - 113; Fungi - 60; Plants - 1413; Viruses - 0; Other Eukaryotes - 588 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5269eggNOG:KOG0724EMBL:AB006697EMBL:AY072090
EMBL:AY096571EMBL:AY519532EMBL:CP002688EnsemblPlants:AT5G08520
EnsemblPlants:AT5G08520.1entrez:830751Gene3D:1.10.10.60GeneID:830751
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT5G08520.1hmmpanther:PTHR24078hmmpanther:PTHR24078:SF279
HOGENOM:HOG000237920InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057
InterPro:IPR017884InterPro:IPR017930KEGG:ath:AT5G08520OMA:PPGVDAY
Pfam:PF00249Pfscan:PS51293Pfscan:PS51294PhylomeDB:Q9FNN6
PROSITE:PS51293PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_196469.1
SMART:SM00717SMR:Q9FNN6STRING:3702.AT5G08520.1SUPFAM:SSF46689
TAIR:AT5G08520TIGRfam:TIGR01557TIGRFAMs:TIGR01557UniGene:At.8762
UniProt:Q9FNN6
Coordinates (TAIR10) chr5:-:2755470..2757741
Molecular Weight (calculated) 31815.70 Da
IEP (calculated) 6.80
GRAVY (calculated) -0.78
Length 298 amino acids
Sequence (TAIR10)
(BLAST)
001: MTVEEVSDGS VWSREDDIAF ERALANNTDE SEERWEKIAA DVPGKSVEQI KEHYELLVED VTRIESGCVP LPAYGSPEGS NGHAGDEGAS SKKGGNSHAG
101: ESNQAGKSKS DQERRKGIAW TEDEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH DITSVGNADV STPQGPITGQ
201: NNSNNNNNNN NNNSSPAVAG GGNKSAKQAV SQAPPGPPMY GTPAIGQPAV GTPVNLPAPP HMAYGVHAAP VPGSVVPGAA MNIGQMPYTM PRTPTAHR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)