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AT4G14270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins.
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: dehydration-induced protein (ERD15) (TAIR:AT2G41430.5); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:12365DNASU:827068eggNOG:ENOG410JS33eggNOG:ENOG4111BED
EMBL:AK118928EMBL:AK175142EMBL:AK175489EMBL:AK175550
EMBL:AK176046EMBL:AK176534EMBL:AK176574EMBL:AK176876
EMBL:AL161538EMBL:AY045858EMBL:AY086984EMBL:AY091384
EMBL:CP002687EMBL:Z97335EnsemblPlants:AT4G14270EnsemblPlants:AT4G14270.1
entrez:827068GeneID:827068Genevisible:Q94AR4hmmpanther:PTHR33790
hmmpanther:PTHR33790:SF4HOGENOM:HOG000241366InParanoid:Q94AR4IntAct:Q94AR4
iPTMnet:Q94AR4KEGG:ath:AT4G14270OMA:FWLSANSPaxDb:Q94AR4
Pfam:Q94AR4PhylomeDB:Q94AR4PRIDE:Q94AR4PRO:PR:Q94AR4
Proteomes:UP000006548RefSeq:NP_001031634.1RefSeq:NP_567425.1STRING:3702.AT4G14270.1
TAIR:AT4G14270UniGene:At.4262UniProt:Q94AR4
Coordinates (TAIR10) chr4:+:8218517..8219037
Molecular Weight (calculated) 16657.40 Da
IEP (calculated) 4.70
GRAVY (calculated) -0.69
Length 143 amino acids
Sequence (TAIR10)
(BLAST)
001: MTATIDRRLS TLNPNAPVFD PVEFREVEDF SPKWWDLVTT SKWFRDFWLS ANSENEFLGG DDFSVMEEEF EEMIASSDGG SMADTVTEAD VASYLKMLLN
101: IAESTKEKIY RSKVSSCSPK YNQKKYMNPN FNCRRNHHIY QPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)