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AT1G56220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Dormancy/auxin associated family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Dormancy/auxin associated family protein; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: Dormancy/auxin associated family protein (TAIR:AT1G54070.1); Has 196 Blast hits to 195 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0AKeggNOG:ENOG410YZ0WEMBL:AC069159EMBL:AK317418
EMBL:AY086244EMBL:BT001991EMBL:BT006528EMBL:CP002684
EnsemblPlants:AT1G56220EnsemblPlants:AT1G56220.1entrez:842075ExpressionAtlas:Q8LD26
GeneID:842075Gramene:AT1G56220.1hmmpanther:PTHR33565hmmpanther:PTHR33565:SF1
HOGENOM:HOG000272707InterPro:IPR008406OMA:FAYENASPaxDb:A8MSC4
PaxDb:F4I3L7PaxDb:Q8H0W7Pfam:PF05564PhylomeDB:Q8LD26
PIR:G96603PRIDE:A8MSC4Proteomes:UP000006548RefSeq:NP_564714.1
STRING:3702.AT1G56220.3TAIR:AT1G56220UniGene:At.24468UniGene:At.70038
UniProt:Q8LD26
Coordinates (TAIR10) chr1:+:21043414..21044469
Molecular Weight (calculated) 14518.80 Da
IEP (calculated) 9.60
GRAVY (calculated) -0.75
Length 137 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLLDHLWDD TVAGPRPENG LGKLRKHHTF SFRPSSGNDQ SEAGSARSYG EDSLPEEAVK VTRSIMIIKP PGYQGSSAPA SPAGSTPPLS PFSPPLSPFS
101: GGKEPFRFRR RSTSDAFEKA AGGSETGPRS SPPTYGM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)