AT2G39920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.527 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HAD superfamily, subfamily IIIB acid phosphatase | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HAD superfamily, subfamily IIIB acid phosphatase ; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT4G29260.1); Has 356 Blast hits to 355 proteins in 40 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 0; Plants - 323; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:16663201..16664305 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32673.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.92 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 283 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSAYTHPMER ELSGLSSRGN SELGSRYSIE SGCYMTSLAA SIFIASLVTF GVLMITLLIA LSTMLQSCEN RNIAIVEAQR LDESFGYCKI LSLHSQLNSL 101: DEESELPLLC RDVALHRIKQ GIYLRELNFT IQMALTYFQT IKPMNDNCDV VVIDIDDTNL LEQDSYYMKY IEEAKHQKSI LILALYSKLR SQGYSMVLLS 201: RRPETERNAT IEQLKSRGYS DWSHLIMSRE DTRQKEELER GHRVIGVIGN HMDVLRGQWN WQSKRLFKLP SLTYDDVLDY NER |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)