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AT5G49015.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.875
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Expressed protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Expressed protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J5NFeggNOG:ENOG410Z5JZEMBL:CP002688EnsemblPlants:AT5G49015
EnsemblPlants:AT5G49015.1EnsemblPlants:AT5G49015.2entrez:2746203GeneID:2746203
Gramene:AT5G49015.1Gramene:AT5G49015.2hmmpanther:PTHR37263hmmpanther:PTHR37263:SF1
HOGENOM:HOG000131589KEGG:ath:AT5G49015OMA:FCCGACVProteomes:UP000006548
RefSeq:NP_001032041.1RefSeq:NP_974912.1TAIR:AT5G49015UniGene:At.49823
UniProt:Q3E6Q4
Coordinates (TAIR10) chr5:+:19869690..19870208
Molecular Weight (calculated) 9307.09 Da
IEP (calculated) 7.64
GRAVY (calculated) -0.41
Length 84 amino acids
Sequence (TAIR10)
(BLAST)
1: MHLWPSLKLR NSFKSTSQKR YQRMNSGKQS QSNQQKLLDG DKESGSPEIS SGGGFAVVCR DVAMVLSCCY CCFCCGACID EEEI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)