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AT2G36320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : A20/AN1-like zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT3G52800.1); Has 1065 Blast hits to 1046 proteins in 150 species: Archae - 2; Bacteria - 0; Metazoa - 450; Fungi - 9; Plants - 480; Viruses - 6; Other Eukaryotes - 118 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111UWCeggNOG:KOG3173EMBL:AC006921EMBL:AY086347
EMBL:BT028881EMBL:CP002685EnsemblPlants:AT2G36320EnsemblPlants:AT2G36320.1
entrez:818205EvolutionaryTrace:Q9SJM6Gene3D:4.10.1110.10GeneID:818205
Genevisible:Q9SJM6GO:GO:0003677GO:GO:0008270Gramene:AT2G36320.1
hmmpanther:PTHR10634HOGENOM:HOG000238229InParanoid:Q9SJM6InterPro:IPR000058
InterPro:IPR002653KEGG:ath:AT2G36320OMA:KERQQHQPaxDb:Q9SJM6
PDB:1WFHPDBsum:1WFHPfam:PF01428Pfam:PF01754
Pfam:Q9SJM6Pfscan:PS51036Pfscan:PS51039PhylomeDB:Q9SJM6
PIR:C84779PRIDE:Q9SJM6PRO:PR:Q9SJM6PROSITE:PS51036
PROSITE:PS51039ProteinModelPortal:Q9SJM6Proteomes:UP000006548RefSeq:NP_565844.1
SMART:SM00154SMART:SM00259SMR:Q9SJM6STRING:3702.AT2G36320.1
SUPFAM:SSF118310SUPFAM:SSF57716TAIR:AT2G36320UniGene:At.14117
UniGene:At.73144UniProt:Q9SJM6
Coordinates (TAIR10) chr2:+:15229388..15229873
Molecular Weight (calculated) 17785.40 Da
IEP (calculated) 8.16
GRAVY (calculated) -0.45
Length 161 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEHRCETP EGHRLCVNNC GFFGSSATMN LCSNCYGDLC LKQQQQASMK STVESSLSPV IAPVLENYAA ELEIPTTKKT EEKKPIQIPT EQPSPPQRPN
101: RCTVCRKRVG LTGFMCRCGT TFCGSHRYPE VHGCTFDFKS AGREEIAKAN PLVIAAKLQK I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)