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AT2G24240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : BTB/POZ domain with WD40/YVTN repeat-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BTB/POZ domain with WD40/YVTN repeat-like protein; FUNCTIONS IN: voltage-gated potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: voltage-gated potassium channel complex, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), BTB/POZ fold (InterPro:IPR011333), Potassium channel, voltage dependent, Kv, tetramerisation (InterPro:IPR003131), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain with WD40/YVTN repeat-like protein (TAIR:AT4G30940.1); Has 926 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 2; Metazoa - 686; Fungi - 7; Plants - 126; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSWIeggNOG:KOG2714EMBL:AC005967EMBL:AK229200
EMBL:BT020254EMBL:BT020435EMBL:CP002685EnsemblPlants:AT2G24240
EnsemblPlants:AT2G24240.1entrez:816958Gene3D:2.130.10.10GeneID:816958
Genevisible:Q9ZUH1GO:GO:0016567GO:GO:0051260Gramene:AT2G24240.1
hmmpanther:PTHR14499hmmpanther:PTHR14499:SF70HOGENOM:HOG000239256InParanoid:Q9ZUH1
InterPro:IPR000210InterPro:IPR003131InterPro:IPR011333InterPro:IPR015943
InterPro:IPR017986KEGG:ath:AT2G24240OMA:KSYTAGAPaxDb:Q9ZUH1
Pfam:PF02214Pfam:Q9ZUH1Pfscan:PS50097PhylomeDB:Q9ZUH1
PIR:C84634PRIDE:Q9ZUH1PRO:PR:Q9ZUH1PROSITE:PS50097
ProteinModelPortal:Q9ZUH1Proteomes:UP000006548RefSeq:NP_180001.1SMART:SM00225
SMR:Q9ZUH1STRING:3702.AT2G24240.1SUPFAM:SSF50978SUPFAM:SSF54695
TAIR:AT2G24240UniGene:At.39188UniPathway:UPA00143UniProt:Q9ZUH1
Coordinates (TAIR10) chr2:+:10310838..10312163
Molecular Weight (calculated) 49170.00 Da
IEP (calculated) 4.69
GRAVY (calculated) -0.23
Length 441 amino acids
Sequence (TAIR10)
(BLAST)
001: MGISKDRIKF NVGGRLFETT ATTLANAGRD SFFGALFDDE WNLSPLEDSI LFVDRNSDCF AVLLDLLRTG DLNVPANIPE RLLHREASFY GLLDHVRTAK
101: WGPFDGNRLR LSDSVKGIAP GDGTAIRAGP DGGCCVAHGS VVHVFDWMLE EHSPINLDYQ RVNDVGWIDS DNIVLSACEK LGRGDGGMGL FSSSSGDLRY
201: KFQVCHENQV KSYTAGALSF SPDYEIFASC KGRSNEYGIG VWDQITGKQT DFFYESPGWS LGDADKLQWL NGKNCLLVAT LFPRKDNCYI SLLDFRDKNM
301: VWSWSDIGSP MAIDEKRVRD AIAMEDSNSI CVVNEFEDLG FIDLRMYGGS VRWSSRSKLM KSKMPDEPCY PKLALHEGQL FSSMNDSISV FCGPDWVLTS
401: RLRRSYGGSI CDFSIGGDRL FALHSEENVF DVWETPPCPI I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)