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AT5G55970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.978
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G26580.2); Has 9514 Blast hits to 9491 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 2536; Fungi - 688; Plants - 4940; Viruses - 19; Other Eukaryotes - 1331 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AY085253EMBL:CP002688
EnsemblPlants:AT5G55970EnsemblPlants:AT5G55970.1EnsemblPlants:AT5G55970.2entrez:835695
Gene3D:3.30.40.10GeneID:835695GO:GO:0008270GO:GO:0016021
Gramene:AT5G55970.1Gramene:AT5G55970.2hmmpanther:PTHR14155hmmpanther:PTHR14155:SF83
HOGENOM:HOG000238199InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT5G55970
OMA:DDPECCIPfam:PF13639Pfscan:PS50089PhylomeDB:Q8LES9
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_568834.1RefSeq:NP_851197.1
SMART:SM00184SMR:Q8LES9STRING:3702.AT5G55970.1SUPFAM:SSF57850
TAIR:AT5G55970TMHMM:TMhelixUniGene:At.7462UniProt:Q8LES9
Coordinates (TAIR10) chr5:+:22668019..22669312
Molecular Weight (calculated) 39038.90 Da
IEP (calculated) 8.21
GRAVY (calculated) -0.08
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MNTRYSNQPE LSSSNITITI SSSALLSSSP RGDNSHVAAA NGQERSPSSF YIRLAMKVSR ARWFIFLRRV FHYQNGSRSD LGSNPFNSST WMMSELIALL
101: VQLTVITFTL AISKEERPIW PVRLWITGYD VGCLLNLMLL YGRYRQLDIN QGNGFVLGDV EQQQRGREET RSSHLMNKCR TSLELFFAIW FVIGNVWVFD
201: SRFGSFHHAP KLHVLCVSLL AWNAICYSFP FLLFLFLCCL VPLISSLLGY NMNMGSSDRA ASDDQISSLP SWKFKRIDDS ASDSDSDSAT VTDDPECCIC
301: LAKYKDKEEV RKLPCSHKFH SKCVDQWLRI ISCCPLCKQD LPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)