AT1G80280.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.972 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : alpha/beta-Hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G15490.1); Has 7676 Blast hits to 7658 proteins in 1204 species: Archae - 71; Bacteria - 5735; Metazoa - 276; Fungi - 71; Plants - 550; Viruses - 0; Other Eukaryotes - 973 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:30183839..30186141 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71110.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.06 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.13 | ||||||||||||||||||||||||||||||||||||
| Length | 647 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKGWFMVEK ARRCLRTVFF MVAMLVSLLV SSLPVLVAIG DVLVPTFLLS SFTCLTCYGF KEHLSRYAFK SSLTDIPLVS LVRSFLVICV YSLSDAPALS 101: HGPYLGTVSL CSVVSVVLLS VKACVFTANS QLNDQASSSP SRQRLHLKKS WGMPVLFLSS VVFALGHMVV AYRTSCRARR KLLYHRVDPE AVLSCKSVFS 201: GYQKVPRSPI PLVGKASKVD GEARRKLHPS VSNDDGELPA RLLADLDSLF ITVRGLTVHY KICTPASPRH SISSSVEANS MLNMPEAMVG RLKLDRNILS 301: MVTRNKLNHH HHRSYSSLFN NSSSLHDPLL DGLPTSPRLF KDIQEESCRE DGINVSNFGA TEQQDVGGNG QFGVVLVHGF GGGVFSWRHV MSSLAHQLGC 401: VVTAFDRPGW GLTARPHKKD LEEREMPNPY TLDNQVDMLL AFCHEMGFAS VVLVGHDDGG LLALKAAQRL LETKDPIKVK GVVLLNVSLT REVVPAFARI 501: LLHTSLGKKH LVRPLLRTEI AQVVNRRAWY DPAKMTTDVL RLYKAPLHVE GWDEALHEIG RLSSEMVLPT QNALSLLKAV ENLPVLVVAG AEDALVPLKS 601: SQVMASKLEN SRLVAISGCG HLPHEECPKA LLAAMCPFIS RLVFSED |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)