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AT3G63010.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4.
Computational
Description (TAIR10)
GA INSENSITIVE DWARF1B (GID1B); FUNCTIONS IN: hydrolase activity; INVOLVED IN: floral organ morphogenesis, raffinose family oligosaccharide biosynthetic process, positive regulation of gibberellic acid mediated signaling pathway, response to gibberellin stimulus, gibberellin mediated signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G27320.1); Has 9567 Blast hits to 9549 proteins in 1556 species: Archae - 107; Bacteria - 5744; Metazoa - 546; Fungi - 719; Plants - 1351; Viruses - 5; Other Eukaryotes - 1095 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G63010-MONOMERBioGrid:10790DIP:DIP-37662NEC:3.-.-.-
eggNOG:COG0657eggNOG:KOG1515EMBL:AK228182EMBL:AL163816
EMBL:BT028997EMBL:CP002686EnsemblPlants:AT3G63010EnsemblPlants:AT3G63010.1
entrez:825476ESTHER:arath-GID1BGene3D:3.40.50.1820GeneID:825476
Genevisible:Q9LYC1GO:GO:0005634GO:GO:0009739GO:GO:0009740
GO:GO:0009939GO:GO:0010476GO:GO:0016787GO:GO:0048444
Gramene:AT3G63010.1hmmpanther:PTHR23024hmmpanther:PTHR23024:SF98HOGENOM:HOG000152323
InParanoid:Q9LYC1IntAct:Q9LYC1InterPro:IPR002168InterPro:IPR013094
InterPro:IPR029058InterPro:IPR033140KEGG:ath:AT3G63010KO:K14493
OMA:GVNFPKSPaxDb:Q9LYC1Pfam:PF07859Pfam:Q9LYC1
PhylomeDB:Q9LYC1PIR:T48090PRO:PR:Q9LYC1PROSITE:PS01173
PROSITE:PS01174ProteinModelPortal:Q9LYC1Proteomes:UP000006548RefSeq:NP_191860.1
scanprosite:PS01173scanprosite:PS01174SMR:Q9LYC1STRING:3702.AT3G63010.1
SUPFAM:SSF53474TAIR:AT3G63010tair10-symbols:ATGID1Btair10-symbols:GID1B
UniGene:At.47986UniProt:Q9LYC1
Coordinates (TAIR10) chr3:+:23289717..23290998
Molecular Weight (calculated) 40301.90 Da
IEP (calculated) 7.36
GRAVY (calculated) -0.24
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGGNEVNLN ECKRIVPLNT WVLISNFKLA YKVLRRPDGS FNRDLAEFLD RKVPANSFPL DGVFSFDHVD STTNLLTRIY QPASLLHQTR HGTLELTKPL
101: STTEIVPVLI FFHGGSFTHS SANSAIYDTF CRRLVTICGV VVVSVDYRRS PEHRYPCAYD DGWNALNWVK SRVWLQSGKD SNVYVYLAGD SSGGNIAHNV
201: AVRATNEGVK VLGNILLHPM FGGQERTQSE KTLDGKYFVT IQDRDWYWRA YLPEGEDRDH PACNPFGPRG QSLKGVNFPK SLVVVAGLDL VQDWQLAYVD
301: GLKKTGLEVN LLYLKQATIG FYFLPNNDHF HCLMEELNKF VHSIEDSQSK SSPVLLTP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)