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AT5G14070.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
Encodes glutaredoxin ROXY2. ROXY2, together with ROXY1 (AT3G02000), controls anther development. roxy1 roxy2 double mutants are sterile and do not produce pollen.
Computational
Description (TAIR10)
ROXY2; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: negative regulation of transcription, anther development; LOCATED IN: cellular_component unknown; EXPRESSED IN: tapetum, floral meristem, hypocotyl, anther, root; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Glutaredoxin (InterPro:IPR002109), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT3G02000.1); Has 1062 Blast hits to 1060 proteins in 157 species: Archae - 0; Bacteria - 4; Metazoa - 185; Fungi - 99; Plants - 740; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Protein Annotations
BioGrid:16534eggNOG:COG0695eggNOG:KOG1752EMBL:AB007650
EMBL:AF361802EMBL:AY055101EMBL:AY084985EMBL:CP002688
EMBL:EU332351EnsemblPlants:AT5G14070EnsemblPlants:AT5G14070.1entrez:831256
Gene3D:3.40.30.10GeneID:831256Genevisible:Q8LF89GO:GO:0005634
GO:GO:0005737GO:GO:0009055GO:GO:0015035GO:GO:0045454
GO:GO:0045892Gramene:AT5G14070.1hmmpanther:PTHR10168hmmpanther:PTHR10168:SF62
HOGENOM:HOG000095204InParanoid:Q8LF89IntAct:Q8LF89InterPro:IPR002109
InterPro:IPR011905InterPro:IPR012336iPTMnet:Q8LF89KEGG:ath:AT5G14070
OMA:SWGSYMPPaxDb:Q8LF89Pfam:PF00462Pfam:Q8LF89
Pfscan:PS51354PhylomeDB:Q8LF89PRIDE:Q8LF89PRO:PR:Q8LF89
PROSITE:PS51354ProteinModelPortal:Q8LF89Proteomes:UP000006548RefSeq:NP_196911.1
SMR:Q8LF89STRING:3702.AT5G14070.1SUPFAM:SSF52833TAIR:AT5G14070
tair10-symbols:ROXY2TIGRfam:TIGR02189TIGRFAMs:TIGR02189UniGene:At.26399
UniProt:Q8LF89
Coordinates (TAIR10) chr5:+:4541915..4542337
Molecular Weight (calculated) 14970.50 Da
IEP (calculated) 8.65
GRAVY (calculated) 0.32
Length 140 amino acids
Sequence (TAIR10)
(BLAST)
001: MQYKTETRGS LSYNNNSKVM NNMNVFPSET LAKIESMAAE NAVVIFSVST CCMCHAIKRL FRGMGVSPAV HELDLLPYGV EIHRALLRLL GCSSGGATSP
101: GALPVVFIGG KMVGAMERVM ASHINGSLVP LLKDAGALWL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)