AT5G17760.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G17740.1); Has 22170 Blast hits to 20463 proteins in 2871 species: Archae - 1329; Bacteria - 7564; Metazoa - 3216; Fungi - 2801; Plants - 2591; Viruses - 35; Other Eukaryotes - 4634 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:5860591..5862301 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57462.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.34 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 505 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFFSKDLPSP TSVFTAYASM AGYMMMIRSM AHELIPAPLQ DFIYRTLRSL FFRSSSSTLT LTIDDDNMGM NNEIYRAAQT YLSTKISPDA VRLRISKGHK 101: DKHVNLYLSD GEIVNDVYED VQLVWRFVTD GGDKKGGGGG VGGRGGGGGR RGGMDDDGKS EYFELSFDKK HKDLILNSYV PYIESKAKEI RDERRILMLH 201: SLNSLRWESV ILEHPSTFET MAMEDDLKRD VIEDLDRFIR RKEFYKRVGK AWKRGYLLYG PPGTGKSSLV AAMANYLKFD VYDLQLASVM RDSDLRRLLL 301: ATRNRSILVI EDIDCAVDLP NRIEQPVEGK NRGESQGPLT LSGLLNFIDG LWSSCGDERI IIFTTNHKDR LDPALLRPGR MDMHIYMGHC SFQGFKTLAS 401: NYLGLSDAAM PHRLFPEIER LIDGEVMTPA QVAEELMKSE DADVALEGLV NVLEKMRLKS KESNPVMMKQ KESRLEMEEM RLKSDTEGSP RKNSKRFKKL 501: VLFWT |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)