AT3G28510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28540.1); Has 37676 Blast hits to 28869 proteins in 2974 species: Archae - 1302; Bacteria - 8814; Metazoa - 8958; Fungi - 4310; Plants - 3042; Viruses - 177; Other Eukaryotes - 11073 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:10685656..10687248 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61560.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.12 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.88 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 530 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLETGAIWGI TGTTVTSFMF FWAIYKQYVP AHFRAYVERY FHKMIGWISY YVDIKFTEYT DEGLKRSQAY DSIRNYLASK STALAKRLKA NETKNSKSLV 101: FSMDDHEEIE DEFEGVKVKW YSNVKVIQPQ SNYGQRSSEE RRHFTLSFHR RHRGMIIETY LDHVLREGKA IGLMNRERKL YTNNSSQEWY PWRSGKWSNV 201: PFHHPATFET LAMDPEKKEG IKKDLIKFSK GKDYYKKVGK PWKRGYLLFG PPGTGKSTMI AAIANFLDYD VYDLELTTVK DNSELKKLLL DTTSKSIIVI 301: EDIDCSLDLT GQRKKKKEED EEEDGEEKKE GEKKPKVDDK QSKVTLSGLL NSIDGLWSAC SGEKIIVFTT NFVDKLDPAL IRRGRMDNHI EMSYCKFEAF 401: KVLAKNYLEI ETHDLYGEIE RKLEETDMSP ADVAETLMPK SDEEDADICI KRLVKTLEEE KEKARKLAEE EEKKKAEKEA KKMKKAEEAE EKKKKTEEDE 501: KKEKVKAKEE NGNVSQQNGN SIDLNKKSDS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)