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AT5G11920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.452
cytosol 0.240
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 6-&1-fructan exohydrolase
Curator
Summary (TAIR10)
Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity.
Computational
Description (TAIR10)
6-&1-fructan exohydrolase (cwINV6); FUNCTIONS IN: inulinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, levanase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 32 (InterPro:IPR001362), Glycoside hydrolase, family 32, active site (InterPro:IPR018053), Glycosyl hydrolases family 32, N-terminal (InterPro:IPR013148), Glycosyl hydrolase family 32, C-terminal (InterPro:IPR013189), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: beta-fructofuranosidase 5 (TAIR:AT1G55120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G11920-MONOMERBioCyc:ARA:GQT-1087-MONOMERCAZy:GH32EC:3.2.1.80
eggNOG:COG1621eggNOG:KOG0228EMBL:AL163812EMBL:AY060553
EMBL:AY141991EMBL:CP002688EnsemblPlants:AT5G11920EnsemblPlants:AT5G11920.1
entrez:831065ExpressionAtlas:Q8W4S6Gene3D:2.115.10.20Gene3D:2.60.120.560
GeneID:831065Genevisible:Q8W4S6GO:GO:0005618GO:GO:0005975
GO:GO:0048046GO:GO:0051669hmmpanther:PTHR31953hmmpanther:PTHR31953:SF14
HOGENOM:HOG000181427InParanoid:Q8W4S6IntAct:Q8W4S6InterPro:IPR001362
InterPro:IPR013148InterPro:IPR013189InterPro:IPR013320InterPro:IPR018053
InterPro:IPR023296KEGG:00052+3.2.1.26KEGG:00500+3.2.1.26OMA:YASKAFF
PaxDb:Q8W4S6Pfam:PF00251Pfam:PF08244Pfam:Q8W4S6
PhylomeDB:Q8W4S6PIR:T48551PRIDE:Q8W4S6PRO:PR:Q8W4S6
PROSITE:PS00609ProteinModelPortal:Q8W4S6Proteomes:UP000006548RefSeq:NP_568254.1
scanprosite:PS00609SMART:SM00640SMR:Q8W4S6STRING:3702.AT5G11920.1
SUPFAM:SSF49899SUPFAM:SSF75005TAIR:AT5G11920tair10-symbols:AtcwINV6
tair10-symbols:cwINV6UniGene:At.27459UniProt:Q8W4S6
Coordinates (TAIR10) chr5:+:3839490..3842206
Molecular Weight (calculated) 62101.10 Da
IEP (calculated) 4.79
GRAVY (calculated) -0.37
Length 550 amino acids
Sequence (TAIR10)
(BLAST)
001: MADVMEQNLL QTAVLNRTSF HFQPQRNWLN DPNAPMYYKG FYHLFYQNNP LAPEFSRTRI IWGHSVSQDM VNWIQLEPAL VPSESFDINS CWSGSATILP
101: DGRPVILYTG LDVNNKQQVT VVAEPKDVSD PLLREWVKPK YNPVMVPPSN VPFNCFRDPT EAWKGQDGKW RVLIGAKEKD TEKGMAILYR SDDFVQWTKY
201: PVPLLESEGT GMWECPDFFP VSITGKEGVD TSVNNASVRH VLKASFGGND CYVIGKYSSE TEDFSADYEF TNTSADLRYD HGTFYASKAF FDSVKNRRIN
301: WGWVIETDSK EDDFKKGWAG LMTLPREIWM DTSGKKLMQW PIEEINNLRT KSVSLDDCYE FKTGSTFEIS GITAAQADVE VTFNLPFLEN NPEILDADQV
401: DDATLFDRDS SVGCVYGPFG LLALASSDLS EQTAIFFKVI RRGNGYAVVM CSSEKRSSLR DNIKKSSHGA FLDIDPRHEK ISLRCLIDHS IIESYGVGGK
501: TVITSRVYPK LAIGEAAKLY VFNDGENGVI MTSLEAWSMR NAQINSNPTY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)